Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E08
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical p...    29   2.3  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    28   4.0  

>Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical
           protein T06E4.7 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 336 FF*HNRILLLNG*RFSLKTTRNT*LNIMRLLFI-CNFTNVYYYYNCV 199
           FF +  ++L N   F    T+NT L    ++FI C   +V++YY+ +
Sbjct: 107 FFFYRSMILANSNMFGQYFTKNTLLITFVVIFILCCIESVFFYYSSI 153


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 393 GEXDELQTSINTICKGNAELEKKLRILMLEVEVMRQDGTCAPDSMNTTQWKHLLXL 560
           G+ + L T    + K N ELEKK    MLE + +R+  T    +M  T  K L+ +
Sbjct: 587 GKAEILFTKFGDLVKTNDELEKKAHQKMLEADNLRK--TVEFSNMEMTNVKALMAM 640


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,603,794
Number of Sequences: 27780
Number of extensions: 214433
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)