Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E07
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    39   2e-04
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    36   0.002
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   6.9  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   9.1  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 26/57 (45%), Positives = 33/57 (57%)
 Frame = +2

Query: 98  RRGGKTPNRSK*RRTLQNVKFKASMLKASCTPWLITDKEKAXKLKQSLPPGLQVKEV 268
           RR   T  R K + T ++VKFK    K   T  ++ D +KA KL+QSLPP L V EV
Sbjct: 16  RRKDATSARIK-KNTNKDVKFKLRCSKYLYT-LVVADAKKAEKLRQSLPPDLTVTEV 70



 Score = 28.7 bits (61), Expect = 0.32
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKNPAECQVQGFDAQGFLYTL 195
           K F   ARRKDA S +IKKN  +          +LYTL
Sbjct: 9   KQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTL 46


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = +2

Query: 101 RGGKTPNRSK*RRTLQNVKFKASMLKASCTPWLITDKEKAXKLKQSLPPGLQVKEV 268
           RG  T  R K +   + VKFK    +   T  ++ D +KA KL+QSLPP L V EV
Sbjct: 17  RGDATSARVK-KNQNKAVKFKLRCSRYLYT-LVVADAKKAEKLRQSLPPALTVTEV 70



 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKNPAECQVQGFDAQGFLYTL 195
           K F   A R DA S ++KKN  +          +LYTL
Sbjct: 9   KLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTL 46


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 234 CLSXSAFSLSVMSQGVQEALSIEALNLTFCRVLLYFDR 121
           CL    F L  + QG+    + EA + TF  +LL  +R
Sbjct: 81  CLEALQFGLLAILQGLFSQFAWEACSCTFACMLLTSER 118


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 143 GFFFILTDLASFLL 102
           GFFFIL  L SFL+
Sbjct: 19  GFFFILFPLVSFLM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,143
Number of Sequences: 5004
Number of extensions: 16312
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)