Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E07
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     42   2e-04
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    42   2e-04
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     39   0.001
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    27   4.9  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    27   4.9  

>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 134 RRTLQNVKFKASMLKASCTPWLITDKEKAXKLKQSLPPGLQVKEV 268
           +RT   VKFK    K   T   + D +KA KLKQSLPPGL V+EV
Sbjct: 26  KRTKDAVKFKVRCSKYLYT-LCVFDADKANKLKQSLPPGLTVQEV 69



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKNPAECQVQGFDAQGFLYTL 195
           K F LTARRKDA+SV+IK+     + +      +LYTL
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFK-VRCSKYLYTL 45


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 134 RRTLQNVKFKASMLKASCTPWLITDKEKAXKLKQSLPPGLQVKEV 268
           +RT   VKFK    K   T   + D +KA KLKQSLPPGL V+EV
Sbjct: 56  KRTKDAVKFKVRCSKYLYT-LCVFDADKANKLKQSLPPGLTVQEV 99



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKNPAECQVQGFDAQGFLYTL 195
           K F LTARRKDA+SV+IK+     + +      +LYTL
Sbjct: 39  KDFLLTARRKDARSVRIKRTKDAVKFK-VRCSKYLYTL 75


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +2

Query: 134 RRTLQNVKFKASMLKASCTPWLITDKEKAXKLKQSLPPGLQVKEV 268
           +R+   VKFK    +   T   + D +KA KLKQSLPPGL V+EV
Sbjct: 26  KRSKDAVKFKVRCSRYLYT-LCVHDTDKANKLKQSLPPGLTVQEV 69



 Score = 34.7 bits (76), Expect = 0.024
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKNPAECQVQGFDAQGFLYTLAHH 204
           K F LTARRKDA+SV+IK++    + +      +LYTL  H
Sbjct: 9   KDFLLTARRKDARSVRIKRSKDAVKFK-VRCSRYLYTLCVH 48


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 36  ENYSSSTCRAEIKDIKDFLINGEEERRQIGQNKEE 140
           E+ SS+  +A  ++ K  LING+E+++Q  + +EE
Sbjct: 22  EDDSSNLLQARGRNKKHALINGDEQQQQQEEEEEE 56


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 60  RAEIKDIKDFLINGEEERRQIGQNKEE 140
           R ++KDI +++IN  +E  Q+ Q   E
Sbjct: 544 RMKVKDISEYMINAAKENPQLAQKIHE 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,489,982
Number of Sequences: 37544
Number of extensions: 95452
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)