Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E07
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    47   4e-06
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    28   1.9  
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    28   2.5  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +2

Query: 128 K*RRTLQNVKFKASMLKASCTPWLITDKEKAXKLKQSLPPGLQVKEVK 271
           K ++   N KFK        T  ++ DK+KA KLKQSLPPG+QVKE+K
Sbjct: 24  KIKKNSNNTKFKVRCASYLYT-LVVADKDKAEKLKQSLPPGIQVKELK 70



 Score = 35.5 bits (78), Expect = 0.013
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = +1

Query: 82  KTF*LTARRKDAKSVKIKKNPAECQVQGFDAQGFLYTL 195
           K F + ARRKDAKSVKIKKN    + +      +LYTL
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFK-VRCASYLYTL 45


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -3

Query: 295 YXFNLVTSLYFFNLETWR*TLLKFXSLLFVSDEPGCTGSLEHRSLELDILQGSSL 131
           + F +    YF N + W+ TLL   S       P C    E     LDIL   SL
Sbjct: 7   FLFLIQLGNYFANAKEWKETLLLHHSKNLTGVNPQCNNDTETWLHSLDILTEVSL 61


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 12  LDPLTVLVENYSSSTCRAEIKDIKDFLINGEEERRQIGQNKEE 140
           L P   LVE ++ +T + E +  +D     EEE R+ G N +E
Sbjct: 544 LQPAITLVERFNEATGQLETEVKRDEKKKKEEELREEGDNGKE 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,715,278
Number of Sequences: 27780
Number of extensions: 89190
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)