Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E06
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 128 5e-31
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 128 5e-31
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 1.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.8
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 3.7
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 25 6.4
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 6.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 6.4
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 25 8.5
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 8.5
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.5
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 128 bits (310), Expect = 5e-31
Identities = 65/120 (54%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Frame = +1
Query: 142 VAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 321
VAKSR+WYFL+ + K KK TGEIV FGIW+RY+SRSG HNMY+E+R
Sbjct: 35 VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94
Query: 322 DLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
D + GAV Y DM ARHRAR SI+I+K VEV K RR VKQ N ++FPLP R
Sbjct: 95 DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +2
Query: 44 LREYEVIGRKLPSENEPKPPL 106
L+EY+V+GRK+P+E+EP P L
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 128 bits (310), Expect = 5e-31
Identities = 65/120 (54%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Frame = +1
Query: 142 VAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 321
VAKSR+WYFL+ + K KK TGEIV FGIW+RY+SRSG HNMY+E+R
Sbjct: 35 VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94
Query: 322 DLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
D + GAV Y DM ARHRAR SI+I+K VEV K RR VKQ N ++FPLP R
Sbjct: 95 DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +2
Query: 44 LREYEVIGRKLPSENEPKPPL 106
L+EY+V+GRK+P+E+EP P L
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 306 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 485
+P P P + +VLQ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 486 IAQTCAPLQET 518
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 146 PNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRILVSGYAMSL 286
P++V S D+ + SRRP + S RKF K PS + L G SL
Sbjct: 302 PSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 130 RDPIVAKSRFWYFLRQLKKFK 192
+D ++ RFWY+L + K F+
Sbjct: 475 KDRLIVTFRFWYYLMKAKSFQ 495
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 134 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 259
+ + PN +S IS N R + R LVK L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 486 WESDGAVVELFDLWTATRSSLDY 418
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 345 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQH 473
HS R G+ T + + + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 134 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 259
+ + PN +S IS N R + R L+K L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 192 LELLKLSQEIPETRFGDNWIAERKFSFYSKGGLGSFSDGSLRPITSY 52
L+LLK I DN + K + LGS SD S IT Y
Sbjct: 274 LDLLKQCNVIHSDIKPDNMLVNEKRNILKICDLGSASDASENEITPY 320
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 442 RPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKXXNTYTLL 561
R K+ S I P+ R+H YK+L T + T LL
Sbjct: 49 RNNFKKRFVSGINLPILIRLHFYKKLFTILWLTVRTVALL 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,779
Number of Sequences: 5004
Number of extensions: 48732
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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