Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E06
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 192 1e-48
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 192 1e-48
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 192 1e-48
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 192 1e-48
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 192 1e-48
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 192 1e-48
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 151 1e-36
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 141 1e-33
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 88 3e-17
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 192 bits (467), Expect = 1e-48
Identities = 90/138 (65%), Positives = 102/138 (73%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
RDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP R
Sbjct: 98 RDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHR 157
Query: 499 VHHYKRLNTFAYKXXNTY 552
V + F K NT+
Sbjct: 158 VLRRQHKPRFTTKRPNTF 175
Score = 35.5 bits (78), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 192 bits (467), Expect = 1e-48
Identities = 90/138 (65%), Positives = 102/138 (73%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
RDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP R
Sbjct: 98 RDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHR 157
Query: 499 VHHYKRLNTFAYKXXNTY 552
V + F K NT+
Sbjct: 158 VLRRQHKPRFTTKRPNTF 175
Score = 35.5 bits (78), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 192 bits (467), Expect = 1e-48
Identities = 90/138 (65%), Positives = 102/138 (73%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
RDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP R
Sbjct: 98 RDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHR 157
Query: 499 VHHYKRLNTFAYKXXNTY 552
V + F K NT+
Sbjct: 158 VLRRQHKPRFTTKRPNTF 175
Score = 35.5 bits (78), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 192 bits (467), Expect = 1e-48
Identities = 90/138 (65%), Positives = 102/138 (73%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
RDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP R
Sbjct: 98 RDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHR 157
Query: 499 VHHYKRLNTFAYKXXNTY 552
V + F K NT+
Sbjct: 158 VLRRQHKPRFTTKRPNTF 175
Score = 35.5 bits (78), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 192 bits (467), Expect = 1e-48
Identities = 90/138 (65%), Positives = 102/138 (73%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
RDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP R
Sbjct: 98 RDLTAAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHR 157
Query: 499 VHHYKRLNTFAYKXXNTY 552
V + F K NT+
Sbjct: 158 VLRRQHKPRFTTKRPNTF 175
Score = 35.5 bits (78), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 192 bits (467), Expect = 1e-48
Identities = 90/138 (65%), Positives = 102/138 (73%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
RDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP R
Sbjct: 98 RDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHR 157
Query: 499 VHHYKRLNTFAYKXXNTY 552
V + F K NT+
Sbjct: 158 VLRRQHKPRFTTKRPNTF 175
Score = 35.5 bits (78), Expect = 0.14
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 151 bits (367), Expect = 1e-36
Identities = 69/99 (69%), Positives = 77/99 (77%)
Frame = +1
Query: 256 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAA 435
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 436 CRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKXXNTY 552
CRRP VKQFH+S I+FPLP RV + F K NT+
Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 139
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 141 bits (342), Expect = 1e-33
Identities = 66/98 (67%), Positives = 74/98 (75%)
Frame = +1
Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
+VAKSRFWYF+ QLKK KK++GE V NFGIWLR +SRSG HNMYREY
Sbjct: 38 VVAKSRFWYFVSQLKKMKKSSGETVYCGQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREY 97
Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAA 432
RDL+ GAVTQCYRDMGARHRARAHSIQI+ VE I A+
Sbjct: 98 RDLTTAGAVTQCYRDMGARHRARAHSIQIMMVEEIAAS 135
Score = 37.5 bits (83), Expect = 0.036
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPL 106
MKA G LREY+V+GR+LP+ PPL
Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPL 27
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 87.8 bits (208), Expect = 3e-17
Identities = 42/65 (64%), Positives = 48/65 (73%)
Frame = +1
Query: 358 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 537
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 538 XXNTY 552
NT+
Sbjct: 61 RPNTF 65
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,710,224
Number of Sequences: 237096
Number of extensions: 1716373
Number of successful extensions: 3505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3505
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -