Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E06
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   163   1e-40
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   1.9  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   1.9  
AF026215-2|AAB71324.2|  533|Caenorhabditis elegans Udp-glucurono...    27   7.7  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  163 bits (395), Expect = 1e-40
 Identities = 72/138 (52%), Positives = 94/138 (68%)
 Frame = +1

Query: 139 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 318
           ++AKSRFWYF+  L++ KK  GEI+              N+G+WL+Y+SR+G HNMYREY
Sbjct: 41  VIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREY 100

Query: 319 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 498
           RD +V GAVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +K FH++ IRFPLP R
Sbjct: 101 RDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHR 160

Query: 499 VHHYKRLNTFAYKXXNTY 552
           V   K L+ F     NT+
Sbjct: 161 VTKRKNLSVFTTARQNTH 178



 Score = 33.9 bits (74), Expect = 0.089
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 29  KAKGQ-LREYEVIGRKLPSENEPKPPL 106
           KA G+ L EY V+GRK+P+E EP  P+
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPI 30


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 231 WNFLNRDNFTSGLL-ELLKLSQEIPETRFGDNWIAERKFSFYSKG 100
           W+F  RDNF   +  E  KL+ E  +   G  +  E  F FYS G
Sbjct: 733 WSFFLRDNFNRNMYEEFRKLALE--DAEIGSRYGIEALFRFYSYG 775


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding la
            related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 231  WNFLNRDNFTSGLL-ELLKLSQEIPETRFGDNWIAERKFSFYSKG 100
            W+F  RDNF   +  E  KL+ E  +   G  +  E  F FYS G
Sbjct: 930  WSFFLRDNFNRNMYEEFRKLALE--DAEIGSRYGIEALFRFYSYG 972


>AF026215-2|AAB71324.2|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein36 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -3

Query: 246 DGAFLWNFLNRDNFTSGLLELLKLSQEIPETRFGDNWIAERKFS-FYSKGGLGSFSDGSL 70
           D  F+W +   D   +   E +  S  +P+T      +A+ + S F++  GLGS ++ S 
Sbjct: 331 DVTFIWKYETNDTSFANGTENIHFSNWVPQTAL----LADPRLSAFFTHAGLGSVNEVSY 386

Query: 69  RPITSYSLNCPL 34
             +   ++ CP+
Sbjct: 387 --LGKPTIMCPI 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,255
Number of Sequences: 27780
Number of extensions: 280385
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)