Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_E02
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...   110   7e-25
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    31   0.71 
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   2.9  
Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    28   6.6  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score =  110 bits (265), Expect = 7e-25
 Identities = 57/133 (42%), Positives = 81/133 (60%)
 Frame = +1

Query: 154 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQN 333
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G+L  HVPT+ VL+PGVV++  N+G   
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQ 88

Query: 334 KIFVSSGTITVNDDSSVQVLAEXAHPLESIDRSAAQEALSKAQSEFXXXXXXXXXXXXXI 513
           ++FVSSGT++VN D S QVLAE    +E ID SAA+  L  AQ                I
Sbjct: 89  RLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQ-RASGEGSEVARAEAQI 147

Query: 514 ALQVXEXIVKAAS 552
             +V E ++KAA+
Sbjct: 148 RAEVAEALIKAAT 160


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 142 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 237
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 142 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 237
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 351 RRYEDFILFPIIFKNCNNTRSKNSQ 277
           RR++  +  P+++ N NN  SKN++
Sbjct: 274 RRFDVTVFLPVVYNNVNNYNSKNAE 298


>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = +1

Query: 181 GNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 360
           G +   +K  +K+++ P +SG   +  KH   ++    GVV   +N+  +    V++ T+
Sbjct: 24  GKRFSTEKFNLKKVNSPKYSG---LANKHAIDVSAAAKGVVVSTKNEKGRPAKAVTTSTL 80

Query: 361 TVNDDSSVQVLAEXA 405
           +    +SV+ LA+ A
Sbjct: 81  SKTPVASVRRLAKNA 95


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 196 YDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNK 336
           Y K   +Q+ VP  +   G+LP+ +  L   R  V ++++++  + K
Sbjct: 859 YSKDSDEQLSVPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAK 905


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,225
Number of Sequences: 27780
Number of extensions: 230693
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)