Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E01
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 305 3e-84
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 305 3e-84
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 305 3e-84
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 177 1e-45
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 169 2e-43
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 109 3e-25
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 56 3e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 6e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 46 6e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 43 3e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 43 3e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 40 4e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.009
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.027
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.11
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 30 0.33
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.58
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 1.3
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 1.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 7.2
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 305 bits (750), Expect = 3e-84
Identities = 146/170 (85%), Positives = 155/170 (91%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 497
DKLKA RERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 498 GEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEI 647
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ F EI
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEI 168
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 305 bits (749), Expect = 3e-84
Identities = 145/170 (85%), Positives = 155/170 (91%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 497
DKLKA RERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 498 GEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEI 647
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ F EI
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEI 168
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 305 bits (749), Expect = 3e-84
Identities = 145/170 (85%), Positives = 155/170 (91%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 497
DKLKA RERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 498 GEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEI 647
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ F EI
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEI 168
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 177 bits (431), Expect = 1e-45
Identities = 80/165 (48%), Positives = 111/165 (67%)
Frame = +3
Query: 150 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLK 329
K H+NIV IGHVD+GKST G++++ G +DKRT+ K E+EA E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 330 AXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 509
RE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 510 AGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXE 644
AG + GQTREHA+LA T G+ L+V +NKMD +SE + E
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE 400
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 169 bits (412), Expect = 2e-43
Identities = 83/167 (49%), Positives = 108/167 (64%)
Frame = +3
Query: 150 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLK 329
K +++VV GHVDSGKST G ++++ G I+ R++ K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 330 AXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 509
R RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 510 AGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIK 650
G +NGQTREHA L LG+ +++V VNK+D +SE F EIK
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIK 339
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 109 bits (263), Expect = 3e-25
Identities = 65/162 (40%), Positives = 91/162 (56%)
Frame = +3
Query: 144 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 323
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 324 LKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 503
+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 504 FEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSE 629
QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 56.4 bits (130), Expect = 3e-09
Identities = 46/148 (31%), Positives = 69/148 (46%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
N+ +I H+D+GK+T T ++Y G F + G V+D L A R+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 342 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 521
RGITI+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV- 130
Query: 522 KNGQTREHALLAFTLGVKQLIVXVNKMD 605
QT+ A G+ + ++ VNKMD
Sbjct: 131 -EAQTKVVWKQATKRGIPK-VIFVNKMD 156
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 45.6 bits (103), Expect = 6e-06
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ RE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 342 RGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 464
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 465 DCAVLIVAAGTGEFEAGISKNGQTREH 545
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.6 bits (103), Expect = 6e-06
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
N VI H+D GKST + ++ G I++ + F LDKL+ R
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 342 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 509
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG--- 160
Query: 510 AGISKNGQTREHALLAFTLGVKQLIVXVNKMD 605
QT + +AF+ + +I +NK+D
Sbjct: 161 ----IQAQTLSNFYMAFSQNL-VIIPVLNKVD 187
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 43.2 bits (97), Expect = 3e-05
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIXKF-EKEAXEMGKGSFKYA 308
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 309 WVLDKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 485
+ + + D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAISLFAEMTDDDMK-DMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 43.2 bits (97), Expect = 3e-05
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIXKF-EKEAXEMGKGSFKYA 308
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 309 WVLDKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 485
+ + + D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAISLFAEMTDDDMK-DMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +3
Query: 393 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 572
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 573 KQLIVXVNKMDSTEPPYSEPXFXEI 647
K +I+ NK+D +E + I
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSI 187
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 285 GKGSFKYAWVLDKLKAXRERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 458
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 459 QADCAVLIVAAGTG 500
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.5 bits (73), Expect = 0.027
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIXKFEKEAXEMGKGSFKYAWVLDKLKA 332
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 333 XRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 500
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.5 bits (68), Expect = 0.11
Identities = 25/105 (23%), Positives = 46/105 (43%)
Frame = +3
Query: 171 VIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRERGI 350
++GHVD+GK+ +L + + + ++ +G F + K K ++G
Sbjct: 489 ILGHVDTGKTKLLDNL--RRSNVQEGEAGGITQQ---IGATYFPIESIKQKTKVVNKKG- 542
Query: 351 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 485
K + + + IID PGH F GTS + A+L++
Sbjct: 543 -------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 355 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNXSMVRLSIPPH 227
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 318 DKLKAXR-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 440
+K++A E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYA--WVLDKLKAX 335
+ +V GH+ GKS L+Y + + S +Y L++ +
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYTDTHYLERERVM 190
Query: 336 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 485
+ + +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 191 SIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 379 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNXSMV 248
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 8 LLLESIXATITRS----FVTPVAECQKKLFCEREKVK 106
+LL SI T RS F+T + + Q ++FC RE ++
Sbjct: 2092 VLLPSIQRTKVRSDGDPFITSLNKNQSRIFCFREPIR 2128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,219
Number of Sequences: 5004
Number of extensions: 44954
Number of successful extensions: 143
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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