Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_E01
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 328 2e-90
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 328 2e-90
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 297 4e-81
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 239 4e-68
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 202 2e-52
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 202 2e-52
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 184 5e-47
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 134 7e-32
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 91 6e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 91 6e-19
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 87 8e-18
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 87 8e-18
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 87 8e-18
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 9e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 54 9e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 6e-06
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 42 3e-04
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 40 0.001
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.004
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 36 0.019
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 36 0.025
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 36 0.033
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 36 0.033
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 35 0.058
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 35 0.058
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.2
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.6
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 2.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 328 bits (806), Expect = 2e-90
Identities = 155/170 (91%), Positives = 159/170 (93%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 497
DKLKA RERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 498 GEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEI 647
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE F EI
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 328 bits (806), Expect = 2e-90
Identities = 155/170 (91%), Positives = 159/170 (93%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 497
DKLKA RERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 498 GEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEI 647
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE F EI
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 297 bits (729), Expect = 4e-81
Identities = 139/149 (93%), Positives = 143/149 (95%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 497
DKLKA RERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 498 GEFEAGISKNGQTREHALLAFTLGVKQLI 584
GEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 239 bits (584), Expect(2) = 4e-68
Identities = 110/117 (94%), Positives = 113/117 (96%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 318 DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 488
DKLKA RERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 37.5 bits (83), Expect(2) = 4e-68
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 579 LIVXVNKMDSTEPPYSEPXFXEI 647
L+V NKMDSTEPP+SE F EI
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEI 136
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 202 bits (492), Expect = 2e-52
Identities = 96/168 (57%), Positives = 122/168 (72%)
Frame = +3
Query: 147 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 326
+K IN++V+GHVD+GKST GHL++ +D RTI KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 327 KAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 506
+ RERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 507 EAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIK 650
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ F EIK
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIK 332
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 202 bits (492), Expect = 2e-52
Identities = 96/168 (57%), Positives = 122/168 (72%)
Frame = +3
Query: 147 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 326
+K IN++V+GHVD+GKST GHL++ +D RTI KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 327 KAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 506
+ RERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 507 EAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIK 650
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ F EIK
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIK 350
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 184 bits (448), Expect = 5e-47
Identities = 83/170 (48%), Positives = 115/170 (67%)
Frame = +3
Query: 141 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 320
G K HIN+V +GHVD+GKST G L++ G +DKRT+ K+E+EA E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 321 KLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 500
RE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 501 EFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFXEIK 650
EFE G + GQTREH++L T GVK L++ VNKMD + E F EI+
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIE 273
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 134 bits (323), Expect = 7e-32
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 317
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 318 DKLKAXR 338
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 91.1 bits (216), Expect = 6e-19
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Frame = +3
Query: 150 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 323
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 324 LKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 503
K ++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 504 FEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 614
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 91.1 bits (216), Expect = 6e-19
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Frame = +3
Query: 150 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 323
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 324 LKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 503
K ++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 504 FEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 614
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 87.4 bits (207), Expect = 8e-18
Identities = 61/156 (39%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Frame = +3
Query: 144 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 323
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 89
Query: 324 LKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 503
+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 504 FEAGISKNGQTREHALLAFTLGV--KQLIVXVNKMD 605
QTREH LLA +GV ++V +NK+D
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 87.4 bits (207), Expect = 8e-18
Identities = 61/156 (39%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Frame = +3
Query: 144 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 323
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 90
Query: 324 LKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 503
+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 504 FEAGISKNGQTREHALLAFTLGV--KQLIVXVNKMD 605
QTREH LLA +GV ++V +NK+D
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 87.4 bits (207), Expect = 8e-18
Identities = 61/156 (39%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Frame = +3
Query: 144 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 323
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 90
Query: 324 LKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 503
+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 504 FEAGISKNGQTREHALLAFTLGV--KQLIVXVNKMD 605
QTREH LLA +GV ++V +NK+D
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 58.0 bits (134), Expect = 5e-09
Identities = 46/148 (31%), Positives = 66/148 (44%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
N ++ HVD GKST L+ CG + +K+ +LDKL+ RE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 342 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 521
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 522 KNGQTREHALLAFTLGVKQLIVXVNKMD 605
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.0 bits (124), Expect = 9e-08
Identities = 46/148 (31%), Positives = 64/148 (43%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
NI + H+DSGK+T T ++Y G ID E+ +G +D + R+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 342 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 521
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 522 KNGQTREHALLAFTLGVKQLIVXVNKMD 605
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 54.0 bits (124), Expect = 9e-08
Identities = 38/113 (33%), Positives = 52/113 (46%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
NI VI HVD+GK+T T L+Y G I A + KG+ V D L RE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 342 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 500
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 44.0 bits (99), Expect(2) = 6e-06
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +3
Query: 285 GKGSFKYAWVLDKLKAXRERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 461
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 462 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 605
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.4 bits (48), Expect(2) = 6e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 111 LYP*LH*PKMGKEKTHINIVVIGHVDSGKST 203
L+P L E+ + ++GHVD GK+T
Sbjct: 141 LHPQLEASPKDLERRPPIVTIMGHVDHGKTT 171
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.3 bits (95), Expect = 3e-04
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Frame = +3
Query: 159 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXR 338
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 339 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 515
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 516 ISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 614
I QT EH LLA ++I+ +NK D E
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE 139
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKF-------EKEAXEMGK 290
M +++ N+ VI HVD GKST T L+ K G I K +F ++ +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 291 GSFKYAWVLDKLKAXRERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 458
+ + L+K +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 459 QADCAVLIVAAGTG 500
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 39.9 bits (89), Expect = 0.002
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Frame = +3
Query: 138 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKF-------EKEAXEMGK 290
M +++ N+ VI HVD GKST T L+ K G I K +F ++ +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 291 GSFKYAWVLDKLKAXRERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 458
+ + L+K +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 459 QADCAVLIVAAGTG 500
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.004
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 11/169 (6%)
Frame = +3
Query: 132 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIXKFEKEAXEMGKGSFK 302
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 303 YAWVL------DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS-- 458
+L + + +D + +K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTIFGMTGH 250
Query: 459 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 605
D +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 251 MPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 291
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 36.3 bits (80), Expect = 0.019
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 144 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 320
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 321 KLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 485
+ + RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 36.3 bits (80), Expect = 0.019
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 144 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 320
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 321 KLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 485
+ + RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 393 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 572
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 573 KQLIVXVNKMDSTEPPYSEPXFXEI 647
L++ NK+D + + + +I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 35.5 bits (78), Expect = 0.033
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 342 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 500
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 35.5 bits (78), Expect = 0.033
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 162 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAXRE 341
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 342 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 500
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 34.7 bits (76), Expect = 0.058
Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Frame = +3
Query: 159 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKA 332
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 333 XRERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 494
RG ++ A E S VT+ID G + K I G + A L+VAA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAA- 284
Query: 495 TGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 605
+ GI+ TREH L L + + V + KMD
Sbjct: 285 ----DRGIT--WATREHLGLIAALNI-PMFVLITKMD 314
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 34.7 bits (76), Expect = 0.058
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Frame = +3
Query: 132 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIXKFEKEAXEMGKGSFK 302
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 303 YAWVL------DKLKAXRERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ- 461
+L + + +D + +K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTIFGMHRP 250
Query: 462 --ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 605
+ +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 251 YARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 292
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 598 LFTXTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 470
LF T+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 402 IIDAPGHRDFIKNMITGTSQADCAVLIV 485
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -2
Query: 581 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 423
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 422 VSRSINDGNIVLASFELPESNIDCDTTLTXSL*FVQYPSI 303
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 159 INIVVIGHVDSGKSTTT 209
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 396 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 491
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,610,193
Number of Sequences: 27780
Number of extensions: 257234
Number of successful extensions: 711
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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