Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D21
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    31   0.60 
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    29   4.2  
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578...    28   5.6  
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935...    28   7.4  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   7.4  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 357 NP*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 217
           +P T  + T A   S S + C DSPT +T++G  T +     S   T
Sbjct: 3   SPTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 342  VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 190
            V + G  G  + R     SP F    G+   +C D A+  + +  SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188


>03_05_0536 -
           25357355-25357411,25357463-25357588,25357764-25357892,
           25358015-25358164,25358253-25358373,25360946-25361247
          Length = 294

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
 Frame = +2

Query: 74  EFFYGVTLSSSHQSETWDPEAKA-EYPRSNKLVIRQA------LLGPDA-KPDELNVIQV 229
           E F      SSH    +D EA+A +  RS+  ++ +A      +L   A + D L   Q 
Sbjct: 136 ELFERANGESSHVLRIFDDEAQAMQSARSSSRMLDEAYETGVAILHKYADQRDRLKSAQR 195

Query: 230 EAMSLQEAVKLPVAVLKVGESRHVRLD--IEFPDAPVTFTLVQGF 358
           +A+ +   V L  +VLK+ E RH R+D  I +    +T    +GF
Sbjct: 196 KALDILNTVGLSNSVLKLIERRH-RVDKWIAYAGMMITVVRYKGF 239


>09_06_0050 +
           20493063-20493137,20493253-20493347,20493450-20493547,
           20493684-20493842,20493944-20494055,20494185-20494728,
           20494818-20494915,20494990-20495229,20495312-20495426,
           20495528-20495732,20495805-20496373
          Length = 769

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 394 PRRWCPIKCTGPEPLNKSKCNRRI 323
           PRRW   +C   E  N S CNR+I
Sbjct: 160 PRRWKG-QCVAGEKFNASNCNRKI 182


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +2

Query: 167 VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 298
           ++  A+ GP    DE+N    ++  A+ LQ  ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,346
Number of Sequences: 37544
Number of extensions: 255212
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)