Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_D20
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 108 5e-25
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 108 5e-25
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.49
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 27 1.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 1.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 2.0
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 2.6
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 4.5
SPAC13F5.07c |||previusly annotated as dubious, may not be prote... 25 6.0
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.9
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 7.9
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 108 bits (259), Expect = 5e-25
Identities = 48/99 (48%), Positives = 65/99 (65%)
Frame = +3
Query: 180 LIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXY 359
+I+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W Y
Sbjct: 50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKY 109
Query: 360 XTAXKIDRHLYHSLYMKAXGNVFKNKRVLMEYIHRXNAD 476
+ KID+HLYH+LY++A GN FK+KR L+E+I R A+
Sbjct: 110 RESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAE 148
Score = 77.8 bits (183), Expect = 8e-16
Identities = 32/43 (74%), Positives = 41/43 (95%)
Frame = +1
Query: 40 LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIK 168
L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++K
Sbjct: 4 LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVK 46
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 108 bits (259), Expect = 5e-25
Identities = 48/99 (48%), Positives = 65/99 (65%)
Frame = +3
Query: 180 LIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXY 359
+I+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W Y
Sbjct: 50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKY 109
Query: 360 XTAXKIDRHLYHSLYMKAXGNVFKNKRVLMEYIHRXNAD 476
+ KID+HLYH+LY++A GN FK+KR L+E+I R A+
Sbjct: 110 RESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAE 148
Score = 77.8 bits (183), Expect = 8e-16
Identities = 32/43 (74%), Positives = 41/43 (95%)
Frame = +1
Query: 40 LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIK 168
L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IK
Sbjct: 4 LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIK 46
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.49
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 153 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 58
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 45 AAEEACSLCYAM---W*KEGVVGSK*NQ*DRKHQLQTEHP*DDQGMVSLIKKPVAVHSRA 215
++EEAC CY W K+ + ++ + QLQT H +Q +++ +H+
Sbjct: 207 SSEEACKSCYTQAKTWEKKFREALRDSK-EYAAQLQTIHEEYEQQQAHIVRMEELIHAVE 265
Query: 216 RVRKNTEARRKGRHCGFGKRRG 281
+ RK K K RG
Sbjct: 266 KERKTETDYMKKESLSEQKERG 287
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 50 RRGLQPLLCDVVKRRC--GWIQMKSMRSQTPTPDRTSVR*SRHGLAHQ-ETCSSPLPRP 217
+ GL P V C +I +S PTP +R RHGL E+ P P
Sbjct: 1207 KHGLSPYAFSTVYSNCLNPFISTRSYMGAIPTPQLLDLRALRHGLIQPCESADKPYALP 1265
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 165 DHLTDVLSGVGVCDLIDFIWIQPHLLF 85
+H++DV G+ V LI+ + I+P +LF
Sbjct: 354 EHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 37 PLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKM 162
PL++ + A + GK ++LDP I+N + Q +R++
Sbjct: 260 PLQMPQHRAVECVITGKPAIYLDPVTQLPISNVQAFQQVREV 301
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 312 VPSVAYAHWQYLFSYQS 262
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 83 VKRRCGWIQMKSMRSQTPTPDRTSVR 160
++R G M S+ S TPTP + VR
Sbjct: 131 MRRDFGMTSMSSITSSTPTPSQLPVR 156
>SPAC13F5.07c |||previusly annotated as dubious, may not be protein
coding|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 6.0
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +1
Query: 97 WLDP--NEINE--IANTNSRQNIRKMIKAWSRSSRNL*QSTPAPVSAKTQRHVERVVTV 261
W+D + INE ++ ++ R++ RK+ + + +S+ L S+P V K +RH V +V
Sbjct: 28 WIDKVVDAINEGHVSESDERES-RKLGEKMNVNSQKLKTSSPPKVVRKNKRHHTTVKSV 85
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 85 KKKVWLDPNEINEIANTNSRQNIRKMIKAWSRSSRNL*QSTPAPVSAKTQ--RHVERVVT 258
K V L N+ +N+NSR K +K SSR+ ++T S+ ++ + R+V
Sbjct: 25 KSNVVLKKNKGAMKSNSNSRSRGNKKLKESQFSSRDNFRTTQTQASSSSEPSDNTNRLVP 84
Query: 259 VALV 270
V ++
Sbjct: 85 VVII 88
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 276 FSYQSHSDDPFYVPLCFCGHGR 211
FS + +D+P Y P+ CG G+
Sbjct: 37 FSQCAITDEPLYPPIVSCGLGK 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,516
Number of Sequences: 5004
Number of extensions: 41271
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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