Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D20
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   121   3e-28
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   121   3e-28
04_04_1687 - 35365766-35366356,35367137-35368135                       29   2.6  
02_05_0067 + 25557975-25558553                                         29   2.6  
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524...    27   6.0  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  121 bits (292), Expect = 3e-28
 Identities = 54/101 (53%), Positives = 68/101 (67%)
 Frame = +3

Query: 180 LIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXY 359
           +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW             Y
Sbjct: 50  IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109

Query: 360 XTAXKIDRHLYHSLYMKAXGNVFKNKRVLMEYIHRXNADNA 482
             A KID+H+YH +YMK  GN+FKNKRVLME IH+  A+ A
Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKA 150



 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = +1

Query: 34  VPLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIK 168
           V LKLQKRLA+SV++CGK KVWLDPNE+NEI+  NSRQNIRK++K
Sbjct: 2   VSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVK 46


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  121 bits (292), Expect = 3e-28
 Identities = 54/101 (53%), Positives = 68/101 (67%)
 Frame = +3

Query: 180 LIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXY 359
           +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW             Y
Sbjct: 50  IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109

Query: 360 XTAXKIDRHLYHSLYMKAXGNVFKNKRVLMEYIHRXNADNA 482
             A KID+H+YH +YMK  GN+FKNKRVLME IH+  A+ A
Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKA 150



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 35/45 (77%), Positives = 41/45 (91%)
 Frame = +1

Query: 34  VPLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIK 168
           V LKLQKRLAASV++CGK KVWLDPNE+NEI+  NSRQNIRK++K
Sbjct: 2   VSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVK 46


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 182 HQETCSSPLPRPCPQKHR 235
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


>02_05_0067 + 25557975-25558553
          Length = 192

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 441 HACS*THYXSPSCRVSGIDACQSXW 367
           H C   H   P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172


>05_07_0333 -
           29351372-29351665,29351786-29351928,29352374-29352434,
           29352950-29353034,29353254-29353292,29353487-29353557,
           29353640-29353735,29353869-29354017,29354106-29354175,
           29354752-29354792,29354902-29354977
          Length = 374

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 89  RRCGWIQMKSMRSQTPTP--DRTSVR*SRHGLAHQETCS 199
           RR GW  M +MR Q P P  +  S+   +  + H+++ S
Sbjct: 235 RRSGWSDMDAMRRQVPPPAINAGSLAKQKSPIGHEQSTS 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,239
Number of Sequences: 37544
Number of extensions: 309888
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)