Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D20
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   124   3e-29
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    27   9.4  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  124 bits (300), Expect = 3e-29
 Identities = 56/100 (56%), Positives = 69/100 (69%)
 Frame = +3

Query: 180 LIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXY 359
           +I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW             Y
Sbjct: 50  IIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRY 109

Query: 360 XTAXKIDRHLYHSLYMKAXGNVFKNKRVLMEYIHRXNADN 479
             A K+D+HLYH LY++A GN FKNK+ L+EYI +   +N
Sbjct: 110 RDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTEN 149



 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 26/42 (61%), Positives = 39/42 (92%)
 Frame = +1

Query: 40  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI 165
           L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++
Sbjct: 4   LRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLV 45


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -2

Query: 293 RIGSTSSLTKATVTTLSTCLCVFADTGAGVDCYRFLDE--RDHALIILRMFCLE-LVFAI 123
           ++G +SSL    +T  ST  C          C R   +  R+ +  +L+++    ++  +
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIV 291

Query: 122 SLISFGSNHTFFLPHRIT 69
           S +SF  + T  +P R+T
Sbjct: 292 SWVSFWFDRT-AIPARVT 308


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  RLAASVMRCGKKKVWLDPNEI 117
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -2

Query: 293 RIGSTSSLTKATVTTLSTCLCVFADTGAGVDCYRFLDE--RDHALIILRMFCLE-LVFAI 123
           ++G +SSL    +T  ST  C          C R   +  R+ +  +L+++    ++  +
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIV 291

Query: 122 SLISFGSNHTFFLPHRIT 69
           S +SF  + T  +P R+T
Sbjct: 292 SWVSFWFDRT-AIPARVT 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,714,281
Number of Sequences: 27780
Number of extensions: 250738
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)