Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_D18
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 208 7e-55
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 188 8e-49
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 121 8e-29
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 103 2e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 90 2e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 90 3e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 4e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 87 2e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 87 3e-18
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 84 2e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 80 2e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 79 7e-16
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 77 3e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 76 4e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 75 9e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 75 1e-14
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 74 2e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 73 4e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 72 8e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 63 4e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 62 9e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 62 9e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 4e-10
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 33 0.027
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 32 0.062
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.33
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.58
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 3.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 26 4.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.4
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.4
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 25 7.2
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 7.2
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 25 9.5
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 208 bits (507), Expect = 7e-55
Identities = 96/131 (73%), Positives = 117/131 (89%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALGDHLNA 438
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQI VV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 439 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSX 618
+CHACIGGT VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEMLS
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR 176
Query: 619 GFXDXIHDVFK 651
GF D I+D+F+
Sbjct: 177 GFKDQIYDIFQ 187
Score = 77.4 bits (182), Expect = 2e-15
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 102 MDPGTLDTDWDQVVETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAIMPCI 251
++ ++T++D+V++TFDDMNLK LL GIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 188 bits (457), Expect = 8e-49
Identities = 87/131 (66%), Positives = 107/131 (81%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALGDHLNA 438
RDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI VV+ALGDH+N
Sbjct: 59 RDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 439 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSX 618
+CHACIGGT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L+
Sbjct: 119 QCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ 178
Query: 619 GFXDXIHDVFK 651
GF + I+D+++
Sbjct: 179 GFKEQIYDIYR 189
Score = 54.4 bits (125), Expect = 1e-08
Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +3
Query: 102 MDPGTLDTDWD-QVVETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAIM 242
M+ L T D V +F++MNLKE LL GIYAYG+E PSA+Q RAI+
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAII 53
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 121 bits (292), Expect = 8e-29
Identities = 61/134 (45%), Positives = 83/134 (61%)
Frame = +1
Query: 244 LASXARDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALG 423
+A RD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Query: 424 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 603
H+N K GGT +R+DI +L VH+VVGTPGRV D+ + + FV+DEAD
Sbjct: 137 KHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEAD 196
Query: 604 EMLSXGFXDXIHDV 645
++LS F I +
Sbjct: 197 KLLSPEFTPIIEQL 210
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 54 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEXLLXGIYAYGFEKPSA 221
+N D+ S+ G P + + V +T F+D LK LL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 222 IQQRAI 239
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 103 bits (247), Expect = 2e-23
Identities = 53/124 (42%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Frame = +1
Query: 244 LASXARDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALG 423
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 424 DHLNAKCHACIGGTNVREDI-RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEA 600
+ K +++ + + + +V+GTPG V D++ RR L A IK+FVLDEA
Sbjct: 209 KYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEA 263
Query: 601 DEML 612
D ML
Sbjct: 264 DNML 267
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +3
Query: 141 VETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAI 239
V++F+++ LK LL GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 90.2 bits (214), Expect = 2e-19
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Frame = +1
Query: 262 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALGDHL-NA 438
DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI +L +
Sbjct: 90 DVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDV 149
Query: 439 KCHACIGGTNVREDI---RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 609
+ GG N+++D+ + H+VV TPGR+ ++ + L N++K FVLDE D++
Sbjct: 150 RTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKL 209
Query: 610 L-SXGFXDXIHDVFK 651
L S I +VF+
Sbjct: 210 LESVDMRRDIQEVFR 224
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = +3
Query: 150 FDDMNLKEXLLXGIYAYGFEKPSAIQQRAIMPCIQXT 260
F D LK LL I GFE PS +QQ I I T
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 89.8 bits (213), Expect = 3e-19
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALGDHLNA 438
R+ I A++G+GKTA F++ I+++ ALIL PTRELA QI ALG +LN
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNL 104
Query: 439 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADE 606
K +GG ++ L HVVV TPGR+ D+I IK V+DEAD
Sbjct: 105 KHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADR 164
Query: 607 MLSXGFXDXIHDVF 648
+LS F D + D F
Sbjct: 165 LLSPTFADDLDDCF 178
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.4 bits (212), Expect = 4e-19
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIXXVVI 414
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQI
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 415 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 594
+ L +C + +GG E Q+ G H+VV TPGR+ D + RR + V+D
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMD 406
Query: 595 EADEMLSXGFXDXIHDV 645
EAD ML GF D ++ +
Sbjct: 407 EADRMLDMGFEDDVNKI 423
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 87.4 bits (207), Expect = 2e-18
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Frame = +1
Query: 244 LASXARDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIXXVVI 414
LA +D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 415 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVL 591
+ + CIGG +++ ++L +V+ TPGR D M + I++ V+
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVM 411
Query: 592 DEADEMLSXGFXDXIHDVFK 651
DEAD ML GF D ++++ +
Sbjct: 412 DEADRMLEDGFADELNEIIQ 431
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 147 TFDDMNLKEXLLXGIYAYGFEKPSAIQQRAI 239
+F MNL +L G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 86.6 bits (205), Expect = 3e-18
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALGDHLNA 438
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 439 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLS 615
+ +GG ++ L HV+V TPGR+ D + + +K ++DEAD +L
Sbjct: 144 RSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD 203
Query: 616 XGFXDXIHDVFK 651
F I + K
Sbjct: 204 MDFGPIIDKILK 215
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 120 DTDWDQVVETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAI 239
D+ ++ +TF ++ + + L GF+ P+ IQQ AI
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 83.8 bits (198), Expect = 2e-17
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Frame = +1
Query: 247 ASXARDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIXXVVIAL 420
AS D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI +
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 421 GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLD 594
N + + GG V++ R L HVVV TPGR++ +I L N IK VLD
Sbjct: 216 KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLD 275
Query: 595 EADEML 612
EAD +L
Sbjct: 276 EADRLL 281
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 80.2 bits (189), Expect = 2e-16
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIXXVVIALGDHL 432
RDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q VV
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGT 166
Query: 433 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 612
+ + A +GG ++ E L +VV TPGR + L ++I+ V DEAD +
Sbjct: 167 DLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLF 226
Query: 613 SXGFXDXIHDV 645
GF + ++
Sbjct: 227 EMGFAAQLTEI 237
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 78.6 bits (185), Expect = 7e-16
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIXXVVIALGDH 429
RDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + +L
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQG 262
Query: 430 LNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 609
N K GG E R ++ V++GTPGR+ D+I ++ + + VLDEAD M
Sbjct: 263 TNLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRM 321
Query: 610 LSXGFXDXIHDV 645
L GF I ++
Sbjct: 322 LDTGFEQDIRNI 333
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 76.6 bits (180), Expect = 3e-15
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIXXVVIA 417
+D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI V
Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANK 238
Query: 418 LGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKL 582
L + H C+ IGG + + ++ GV++++GTPGR+ D + AL + ++
Sbjct: 239 LNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRW 297
Query: 583 FVLDEADEMLSXGFXDXI 636
VLDE D ++ GF + +
Sbjct: 298 VVLDEGDRLMDMGFEETL 315
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 76.2 bits (179), Expect = 4e-15
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIXXVVIALGD 426
RDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLK 186
Query: 427 HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 603
+ + IGG N R + +L GV+++V TPGR+ D + + ++ V+DEAD
Sbjct: 187 YHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD 246
Query: 604 EMLSXGFXDXIHDVFK 651
+L GF D + + K
Sbjct: 247 RILEIGFEDEMRQIMK 262
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 141 VETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAIMPCIQXTRCYRSSPVRNWKNCYFL 311
+E F D+ L E + I GFE + IQ+R+I P + ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 74.9 bits (176), Expect = 9e-15
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Frame = +1
Query: 244 LASXARDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 369
+ + RD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 370 APTRELAQQIXXVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT 549
APTREL QI + A GG ++R IRQ++ G ++ TPGR+ D+I
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLID 321
Query: 550 RRALHANTIKLFVLDEADEMLSXGFXDXIHDV 645
R + IK VLDEAD ML GF I +
Sbjct: 322 RGRISLANIKFLVLDEADRMLDMGFEPQIRHI 353
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 74.5 bits (175), Expect = 1e-14
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Frame = +1
Query: 244 LASXARDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIXX 405
LA +D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 406 VVIALGDHLNAKCHACIGGTNVREDIRQ--LESGVHVVVGTPGRVYDMITRRALHANTIK 579
V+ L + TN + +++ L +V+ TP R + L + +K
Sbjct: 107 VLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLK 166
Query: 580 LFVLDEADEMLSXGFXD 630
V+DEAD MLS G+ +
Sbjct: 167 FLVIDEADLMLSFGYNE 183
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 144 ETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAI 239
+TF D NL L I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 73.7 bits (173), Expect = 2e-14
Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Frame = +1
Query: 247 ASXARDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIXXVVI 414
A RD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 415 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVL 591
+G + IGG N +E+ +L S ++++V TPGR+ I + + +++ +L
Sbjct: 133 KIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLIL 191
Query: 592 DEADEMLSXGF 624
DEAD +L GF
Sbjct: 192 DEADRILDMGF 202
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 72.9 bits (171), Expect = 4e-14
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Frame = +1
Query: 244 LASXARDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIXXV 408
+A RD++ + +G+GKT ++ + + I+ L+LAPTRELA QI
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 409 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFV 588
G + GG IR L GV + + TPGR+ DM+ + + V
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLV 274
Query: 589 LDEADEMLSXGFXDXIHDV 645
LDEAD ML GF I +
Sbjct: 275 LDEADRMLDMGFEPQIRKI 293
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 141 VETFDDMNLKEXLLXGIYAYGFEKPSAIQQRA 236
V TF++ +L + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 71.7 bits (168), Expect = 8e-14
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILAPTRELAQQIXXVVIALG 423
RDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 424 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLD 594
LN + GG +++ I L+ G +VV TPGR+ D+++ R + + VLD
Sbjct: 516 KLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLD 575
Query: 595 EADEMLSXGF 624
EAD M GF
Sbjct: 576 EADRMFDLGF 585
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 126 DWDQVVETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAIMPCIQXTR 263
D + V ++ L + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.9 bits (146), Expect = 4e-11
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Frame = +1
Query: 262 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIXXVVIALGD 426
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 427 HLNAKCHACIGGTN-VREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEA 600
+ IGG + +RE+ ++++ TPGR+ D + R L + + F+LDEA
Sbjct: 138 GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEA 197
Query: 601 DEMLSXGFXDXIHDV 645
D ++ GF + I ++
Sbjct: 198 DRLMDMGFAESILNI 212
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 61.7 bits (143), Expect = 9e-11
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIXXVVIALGDHLN 435
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI L +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 436 AK-CHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 612
K ++E +L + +GTP R+ I + L ++ FV+DEAD +
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLF 202
Query: 613 SXGFXD 630
GF +
Sbjct: 203 EPGFIE 208
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 61.7 bits (143), Expect = 9e-11
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Frame = +1
Query: 259 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIXXVVIAL--- 420
+D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V L
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAY 98
Query: 421 -------GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIK 579
G L A + GT + E VV+GTPGR+ +M++ + + ++
Sbjct: 99 QPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLE 156
Query: 580 LFVLDEADEMLSXGFXDXIHDV 645
+ +LDEAD ++ GF + +
Sbjct: 157 ILILDEADTLIDMGFQRTLQSI 178
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 59.7 bits (138), Expect = 4e-10
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Frame = +1
Query: 250 SXARDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIXXVVIALGD 426
S DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+
Sbjct: 171 SYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMS 230
Query: 427 HLNAKCHACIGGTNVREDIRQL-----ESGVHVVVGTPGRVYDMITR-RALHANTIKLFV 588
+ A G ++R + QL E + V+V TPGR+ D I + ++ V
Sbjct: 231 GAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMV 290
Query: 589 LDEADEMLSXGFXDXIHDV 645
+DEAD +L F D + V
Sbjct: 291 IDEADRLLDQSFQDWVDTV 309
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 33.5 bits (73), Expect = 0.027
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Frame = +1
Query: 262 DVIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIXXVVIA 417
+++ A +G GKT + IL ++ +RE + + +AP + L Q++
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 418 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA---LHANTIKLFV 588
N + G + + +Q S ++V TP + +D+ITR+A + N ++L +
Sbjct: 597 RLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKANDLSYVNLVRLVI 652
Query: 589 LDE 597
+DE
Sbjct: 653 IDE 655
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 32.3 bits (70), Expect = 0.062
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Frame = +1
Query: 265 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIXXVVIALGDHL---- 432
VI + +GK+ + I ILQ + + A + PT+ LAQ +I + ++
Sbjct: 329 VIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLK 387
Query: 433 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA----LHANTIKLFVLDEA 600
N + G T + E + +++ P ++ I A +KLFVLDEA
Sbjct: 388 NIRVDTFDGDTPL-ESRESIIRSANIIFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 442 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 609
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 29.1 bits (62), Expect = 0.58
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 331 IDTSIRECQALILAPTR-ELAQQIXXVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 504
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 505 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSXGFXD 630
+ + T G YD + L+ + IK V E M G+ D
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGD 446
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 114 TLDTDWDQVVETFDDMNLKEXLLXGIYAYGF 206
T D WD E FDD N + GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 91 DLREWTLGHLTPT 129
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 415 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANTIK 579
A+ DHL+ + CIG N+ ED VH + T G+ ++T H++ I+
Sbjct: 140 AISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSVIQ 189
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 117 LDTDWDQVVETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAIMPCI 251
LDT+W V + NL+ + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 492 QLANIFTDIGAT---NASMAFSIQVITKSYHHXXNLL 391
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 111 QGPFPEVHRNYLDPSMAHFWNPLANL 34
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +1
Query: 364 ILAPTRELAQQIXXVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 522
+LAP REL +++ + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +1
Query: 286 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQI 399
G G T F+ SILQQI + SI +C + +P R + ++I
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERI 131
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 432 QVITKSYHHXXNLLGQLSCGSQDQ 361
+++ KSYH+ N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 639 MDXVXETXGQHFISFIKNKKFDGVGMKRTTSYHI 538
+D V E HF F+KN+ D + +R H+
Sbjct: 476 LDAVYERECNHFKKFVKNELKDSLESQRVDLRHL 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,247
Number of Sequences: 5004
Number of extensions: 57654
Number of successful extensions: 223
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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