Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D18
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       86   2e-19
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 86.2 bits (204), Expect = 2e-19
 Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
 Frame = +1

Query: 259 RDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIXXVV 411
           RD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI   +
Sbjct: 234 RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQI 293

Query: 412 IALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVL 591
           +    +   K     GGT+V     +L +G H++V TPGR+ D + +  +  ++++  VL
Sbjct: 294 VKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVL 353

Query: 592 DEADEMLSXGFXDXI 636
           DEAD ML  GF   I
Sbjct: 354 DEADRMLDMGFLPSI 368



 Score = 29.5 bits (63), Expect = 0.029
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 135 QVVETFDDMNLKEXLLXGIYAYGFEKPSAIQQRAIMPCIQXTR 263
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A +P I   R
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA-LPIIMNGR 234


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 281 SQELEKLLLSLYRFYNKSIQAFVNV 355
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 472 GHWCHQCKHGI*HSS 428
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 562 EAHDELSYHIHDLECPPPHEHHSP 491
           + H  L  H H L+     +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = +2

Query: 164 PQRXIVXRHIRLWF*KTFC----NPATRNNAL 247
           P + +    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 450 LHWWHQCP 473
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 609 HFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 517
           H I+ I +K F GVG+    S+  I+   W++
Sbjct: 126 HLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -1

Query: 556 HDELSYHIHDLECPPPHEHHSPVGEYLHGH 467
           H     H H      PH HHS      H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -1

Query: 517 PPPHEHHSPVGEYLHGHW 464
           PP H HH       H H+
Sbjct: 349 PPHHHHHHQTQSLQHLHY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,843
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)