Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D17
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.44 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   1.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.8  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    27   2.4  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   7.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.5  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 427 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 335
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -3

Query: 386 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGXIFPDDAXSVSPASNHHLI 231
           S +   IP+ P T      +  + KNS A + +L  +     +D  S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 542  VWTCRLWFFGIRLPRTAQ-LPRFPH 613
            +W C LW++G  + R+ Q    FPH
Sbjct: 2068 IWACCLWYWGSYIDRSMQECHSFPH 2092


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 433 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVXFFLMT 269
           S +  D  G  S   P+E+MPL  + +      P  +PG +++  +      L  FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273

Query: 268 LLAF 257
           L+ F
Sbjct: 274 LIPF 277


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 403 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVXFFLMTLLAFPQPPIITSYIG 224
           + PS+P + +P+S        +PP R   +S+   S L  +    L +FP P ++  Y  
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216

Query: 223 SD 218
            D
Sbjct: 217 QD 218


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 565 EPEATGPNLYCNLSGVSNSAPSSI 494
           EPE   PN +   +G+SNS P  I
Sbjct: 315 EPEGLDPNSWWYPNGLSNSMPEEI 338


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 352 KPRYSPPLRIPGLSISTLSGLVXFFLMTLLAFPQPPIITSYIGSD 218
           K  Y+P   I GL++ TLS     +LM L+  P   ++ +  G D
Sbjct: 50  KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 433 SGSDQDMNGIASPSRPAEI-MPLSQRT 356
           SGS  D+  I SP+ PAE   P + RT
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRT 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,548
Number of Sequences: 5004
Number of extensions: 54019
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)