Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D17
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    29   2.9  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 403 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVXFFLMTLLAFPQPP 245
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 511 SAPSSIXQEXXXXXXXXXXXXXTGKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 335
           S P S  Q              +G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 136 SGPGSSQQAVPRTISKISEESGSGSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 98   DVATDDNLQYQFFPAFKWISSVQSQSS 178
            D +TDD L  QF   FK I+S + QSS
Sbjct: 921  DKSTDDKLTNQFMEVFKSIASNEPQSS 947


>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 385 LDARVKLFHSYPGLIRNLSQFTTSESAQAGVPQAPXKSKMERNSILRTGYSISLDL 552
           +D  VKLF +YP L+     +     A  G  +AP KS++    +  T YS+  DL
Sbjct: 391 VDTAVKLFDTYPLLVYPCRIYDHKGGAPQGQLRAPPKSRL----VPGTNYSMFNDL 442


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 89  NVMDVATDDNLQYQFFPAFKWISSVQSQSSE*CPHRAHDRPARIGSYV*GDDWRLGKR 262
           N MD+ T+ +LQ++  P  K+   ++  ++    H    +   +GS+     WRL +R
Sbjct: 388 NCMDIPTNGSLQFEKPPFDKFFIGIKMLNNMTTNHTNLPKIDNVGSFNVNGHWRLIRR 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,900
Number of Sequences: 27780
Number of extensions: 304862
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)