Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_D16
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 31 0.11
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 27 1.8
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 2.4
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 3.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 4.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 4.1
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 7.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 7.2
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.5
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +3
Query: 135 STMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPNGSYIIKNTVTELLNNAESN 314
++++V A DS S + D+D K + + EP G + N L NA+ +
Sbjct: 278 NSVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDD 337
Query: 315 TINFSYKLWT 344
T K +T
Sbjct: 338 TRRAMMKSYT 347
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 381 LEFRLILDDKKDCKIINKHDDLYMTLSKDLXQNGD 485
LE+ L+L + K+IN HD ++ TL L D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 131 MSQL*PSRVVKIFNFI*NSAYVLSSLYPRRPQH 33
+ QL P + I NFI S+++ ++P QH
Sbjct: 566 LKQLWPYIIAMILNFIVRSSFIFYCIFPNHIQH 598
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 234 EQLQSEPNGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKK 413
EQL++ N + K + LLN T NF KL + Q I + P+E L D
Sbjct: 61 EQLETVQNENEENKTKLAALLNRFHEETDNFLSKL-SLCQQEIQDTFKPVEANLAYDVDT 119
Query: 414 DCKIINK 434
D + +++
Sbjct: 120 DSEDLDE 126
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -2
Query: 235 SHLLVASS*SAEMTELYSFR--SDLPESLASTDIVEKCRNYNRAGLLKSSIS 86
S LL+A + + ++TE+ +F S++ + A D + +NY A L+ SSIS
Sbjct: 1167 SALLIAYAKTNQLTEMETFLIGSNVADVKAVGDECFESKNYEAAKLMYSSIS 1218
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 187 TIQSFPLTTMMQPKDASNFNPNRMVR 264
T++ PL+ M + KD+S F NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 361 IFWCPVVHSL*EKLIVLDSALLSSSVTVFFMMYEPFGSD*SCSHL 227
IFW + +K I +D+ +L+ T +EP G+ HL
Sbjct: 324 IFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHL 368
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 225 KRCEQLQSEPNGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 404
K E+L + ++ N+V LN+ NF Y +W+ N QS L + L D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858
Query: 405 DK 410
+K
Sbjct: 859 EK 860
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 ISADYDDATKRCEQLQSEPNGSYIIKNTVT-ELLNNAESNTINFSYKLWTT 347
+ D DA K C + Q + ++K VT E L S+ IN K+ TT
Sbjct: 468 VEKDDRDAIKECVETQLNKQINLLVKKRVTEENLEQEISSIINDLPKISTT 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,919
Number of Sequences: 5004
Number of extensions: 48257
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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