Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D16
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    28   5.6  
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549...    27   9.9  
05_06_0243 - 26639497-26641173                                         27   9.9  

>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 249 EPNGSYIIKNTVTELLNN--AESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKKDCK 422
           +    + +KN +T+   +  A    I  +++L T            +E   I++D    +
Sbjct: 471 DAESEHYVKNVITKFSTDPKARRTVIIIAHRLSTI---QAADRIIVMENGNIVEDGNHSE 527

Query: 423 IINKHDDLYMTLSK 464
           +INKHD LY  L++
Sbjct: 528 LINKHDGLYSRLAR 541


>07_03_0149 -
           14452654-14452666,14452943-14454699,14454886-14454990,
           14455808-14455978,14456309-14456641,14456900-14457492,
           14458864-14458906
          Length = 1004

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 195 VISADYDDATKRCEQLQSEPN 257
           V+ +D +D  +RCEQL SE N
Sbjct: 111 VLDSDDEDEAERCEQLASENN 131


>05_06_0243 - 26639497-26641173
          Length = 558

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 183 LYNSVISADYDDATKRCEQLQ 245
           L NSV  A Y+D  K C QLQ
Sbjct: 272 LRNSVAKASYEDVFKSCPQLQ 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,306,383
Number of Sequences: 37544
Number of extensions: 285997
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)