Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D14
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    44   0.004
UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -...    38   0.16 
UniRef50_P39196 Cluster: Inner membrane protein ygeD; n=44; Prot...    34   2.6  
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur...    33   4.5  
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_A6GS33 Cluster: Cyclic nucleotide-binding domain (CNMP-...    33   7.8  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +3

Query: 549 NSSQNCQTQASSSKLKIAPKPKKTGIXGQKKV 644
           ++S+  + + +++KLKIAPKPKKTGI GQKKV
Sbjct: 117 SASKPAKPKPAAAKLKIAPKPKKTGIKGQKKV 148


>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
           Mycoplasma hyorhinis
          Length = 1187

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 153 TCVSQNTGTCPESSCACPETSCACPE 230
           +C  ++ G C E SCACP T+CAC E
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTE 404



 Score = 38.3 bits (85), Expect = 0.16
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 153 TCVSQNTGTCPESSCACPETSCACPE 230
           +C  ++ G C E SCACP T+CAC E
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTE 860



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 153 TCVSQN-TGTCPESSCACPETSCACPET 233
           TC  Q  T +C +  C C E SCACP T
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNT 398



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 153 TCVSQN-TGTCPESSCACPETSCACPET 233
           TC  Q  T +C +  C C E SCACP T
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNT 854


>UniRef50_P39196 Cluster: Inner membrane protein ygeD; n=44;
           Proteobacteria|Rep: Inner membrane protein ygeD -
           Escherichia coli (strain K12)
          Length = 397

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -2

Query: 631 PLIPVFLGFGAIFNLELLA-WVWQ 563
           P++P+ +GFGA+F L + A W+WQ
Sbjct: 371 PVVPIGIGFGALFALAITALWIWQ 394


>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 149

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 162 SQNTGTCPESSCACPETSC 218
           SQN+G C E+SC CP +SC
Sbjct: 87  SQNSGDCCENSCRCPVSSC 105


>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 155

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 153 TCVSQNTGTCPESSCACPETSCACPE 230
           TC +      PE +C  PE SCA PE
Sbjct: 94  TCCAPEPACAPEPTCCAPEPSCAAPE 119


>UniRef50_A6GS33 Cluster: Cyclic nucleotide-binding domain (CNMP-BD)
           protein; n=1; Limnobacter sp. MED105|Rep: Cyclic
           nucleotide-binding domain (CNMP-BD) protein -
           Limnobacter sp. MED105
          Length = 820

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 540 GCGNSSQNCQTQASSSKLKIAPKPKKTGI 626
           GCGN ++NC   A   +L++ P P+KTG+
Sbjct: 727 GCGNCAKNCPYNA--IELRVKPPPRKTGL 753


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,539,785
Number of Sequences: 1657284
Number of extensions: 2514164
Number of successful extensions: 11369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11332
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)