Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D10
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    58   1e-09
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   3.1  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    26   4.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   4.1  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = +1

Query: 406 NNECQYGFIQPDSLPFRFAS--GGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVRAHWL 579
           N E  YGF     L F  A+   G   L++             AP PKVP ++S  AHWL
Sbjct: 71  NVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAHWL 130

Query: 580 SVDGVQPTVPENPPP 624
           +++GVQP +P+NP P
Sbjct: 131 AIEGVQPAIPQNPTP 145



 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = +3

Query: 216 LDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHAL 395
           ++S+K +A  +GI  L D+ A  +A D+ YR+  +VQ+A KFM HSKR  L+  DI  AL
Sbjct: 8   IESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSAL 67

Query: 396 Q 398
           +
Sbjct: 68  R 68


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 210  LTLDSMKVIAXSVGIATLGDDAAKELADDVTYR 308
            +TLD       +  + TL DD   EL DDV  +
Sbjct: 906  VTLDEFSAPLYATWLTTLDDDELSELTDDVVQK 938


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 168 ISIMGDSXLAYGSSLTLDSMKVIAXSVGIATLGD 269
           I  MG +   Y SS T +++   A SVGIATL D
Sbjct: 43  IFAMGGTIAGYASSST-ETVDYAAGSVGIATLVD 75


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 601 LVEPHPHLANEHEQIHPMEPLEVVLIESPRD 509
           L+  HP L +  E++    P EV  IE P++
Sbjct: 322 LIRQHPELEHVWEKLEEEAPREVKQIEQPKE 352


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 168 ISIMGDSXLAYGSSLTLDSMKVIAXSVGIATLGD 269
           I  MG +   Y SS T +++   A SVGIATL D
Sbjct: 43  IFAMGGTIAGYASSST-ETVDYAAGSVGIATLVD 75


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 559  SVRAHWLSVDGVQPTVPENPPPL 627
            +VRA  +  D + P V ENPPPL
Sbjct: 1155 AVRAA-MKADKIFPAVHENPPPL 1176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,213
Number of Sequences: 5004
Number of extensions: 47831
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)