Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_D10
(655 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein. 101 2e-21
L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein. 101 2e-21
BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,... 101 2e-21
AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,... 101 2e-21
AF069735-1|AAC39905.1| 622|Homo sapiens PCAF associated factor ... 54 3e-07
>U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein.
Length = 677
Score = 101 bits (243), Expect = 2e-21
Identities = 45/85 (52%), Positives = 56/85 (65%)
Frame = +1
Query: 400 IKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVRAHWL 579
+KN E YGF + +PFRFASGGGREL+F P P+VPLDV ++AHWL
Sbjct: 77 LKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWL 136
Query: 580 SVDGVQPTVPENPPPLSKEAQKLES 654
S++G QP +PENPPP KE QK E+
Sbjct: 137 SIEGCQPAIPENPPPAPKEQQKAEA 161
Score = 76.6 bits (180), Expect = 7e-14
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +3
Query: 210 LTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDH 389
L +SMKV+A S+GIA + ++ + L D+V+YR+K I QDA+KFMH KRQKL+ +DID+
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 390 ALQXK 404
AL+ K
Sbjct: 74 ALKLK 78
>L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein.
Length = 677
Score = 101 bits (243), Expect = 2e-21
Identities = 45/85 (52%), Positives = 56/85 (65%)
Frame = +1
Query: 400 IKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVRAHWL 579
+KN E YGF + +PFRFASGGGREL+F P P+VPLDV ++AHWL
Sbjct: 77 LKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWL 136
Query: 580 SVDGVQPTVPENPPPLSKEAQKLES 654
S++G QP +PENPPP KE QK E+
Sbjct: 137 SIEGCQPAIPENPPPAPKEQQKAEA 161
Score = 76.6 bits (180), Expect = 7e-14
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +3
Query: 210 LTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDH 389
L +SMKV+A S+GIA + ++ + L D+V+YR+K I QDA+KFMH KRQKL+ +DID+
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 390 ALQXK 404
AL+ K
Sbjct: 74 ALKLK 78
>BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 101 bits (243), Expect = 2e-21
Identities = 45/85 (52%), Positives = 56/85 (65%)
Frame = +1
Query: 400 IKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVRAHWL 579
+KN E YGF + +PFRFASGGGREL+F P P+VPLDV ++AHWL
Sbjct: 77 LKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWL 136
Query: 580 SVDGVQPTVPENPPPLSKEAQKLES 654
S++G QP +PENPPP KE QK E+
Sbjct: 137 SIEGCQPAIPENPPPAPKEQQKAEA 161
Score = 76.6 bits (180), Expect = 7e-14
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +3
Query: 210 LTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDH 389
L +SMKV+A S+GIA + ++ + L D+V+YR+K I QDA+KFMH KRQKL+ +DID+
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 390 ALQXK 404
AL+ K
Sbjct: 74 ALKLK 78
>AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 101 bits (243), Expect = 2e-21
Identities = 45/85 (52%), Positives = 56/85 (65%)
Frame = +1
Query: 400 IKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVRAHWL 579
+KN E YGF + +PFRFASGGGREL+F P P+VPLDV ++AHWL
Sbjct: 77 LKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWL 136
Query: 580 SVDGVQPTVPENPPPLSKEAQKLES 654
S++G QP +PENPPP KE QK E+
Sbjct: 137 SIEGCQPAIPENPPPAPKEQQKAEA 161
Score = 76.6 bits (180), Expect = 7e-14
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +3
Query: 210 LTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDH 389
L +SMKV+A S+GIA + ++ + L D+V+YR+K I QDA+KFMH KRQKL+ +DID+
Sbjct: 14 LPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDY 73
Query: 390 ALQXK 404
AL+ K
Sbjct: 74 ALKLK 78
>AF069735-1|AAC39905.1| 622|Homo sapiens PCAF associated factor 65
alpha protein.
Length = 622
Score = 54.4 bits (125), Expect = 3e-07
Identities = 25/60 (41%), Positives = 43/60 (71%)
Frame = +3
Query: 219 DSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHALQ 398
+S++++A S G+ L D+ A LA+DV YRL+ Q++ +FM H+KR+KL++ D + AL+
Sbjct: 15 ESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALR 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,927,080
Number of Sequences: 237096
Number of extensions: 1757483
Number of successful extensions: 3543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3538
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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