Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D10
         (655 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06459-1|AAC46480.1|  592|Drosophila melanogaster transcription ...   108   7e-24
AY051702-1|AAK93126.1|  606|Drosophila melanogaster LD24529p pro...   108   7e-24
AE014296-3177|AAF49139.2|  606|Drosophila melanogaster CG32211-P...   108   7e-24
L25443-1|AAA16536.1|  592|Drosophila melanogaster TAFII60 protein.    105   4e-23

>U06459-1|AAC46480.1|  592|Drosophila melanogaster transcription
           initiation factorTFIID 62 kDa subunit protein.
          Length = 592

 Score =  108 bits (259), Expect = 7e-24
 Identities = 48/89 (53%), Positives = 61/89 (68%)
 Frame = +1

Query: 388 MPCXIKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVR 567
           M   ++N E QYGF+  D +PFRFASGGGRELHF                 K+PLD+++R
Sbjct: 66  MSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLR 125

Query: 568 AHWLSVDGVQPTVPENPPPLSKEAQKLES 654
           +HW  V+GVQPTVPENPPPLSK++Q L+S
Sbjct: 126 SHWFVVEGVQPTVPENPPPLSKDSQLLDS 154



 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 44/71 (61%), Positives = 60/71 (84%)
 Frame = +3

Query: 192 LAYGSSLTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLS 371
           + YGSS++ +SMKVIA S+G+ +L DDAAKELA+DV+ +LK IVQDA KFM+H+KRQKLS
Sbjct: 1   MLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLS 60

Query: 372 ITDIDHALQXK 404
           + DID +L+ +
Sbjct: 61  VRDIDMSLKVR 71


>AY051702-1|AAK93126.1|  606|Drosophila melanogaster LD24529p
           protein.
          Length = 606

 Score =  108 bits (259), Expect = 7e-24
 Identities = 48/89 (53%), Positives = 61/89 (68%)
 Frame = +1

Query: 388 MPCXIKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVR 567
           M   ++N E QYGF+  D +PFRFASGGGRELHF                 K+PLD+++R
Sbjct: 80  MSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLR 139

Query: 568 AHWLSVDGVQPTVPENPPPLSKEAQKLES 654
           +HW  V+GVQPTVPENPPPLSK++Q L+S
Sbjct: 140 SHWFVVEGVQPTVPENPPPLSKDSQLLDS 168



 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 45/73 (61%), Positives = 61/73 (83%)
 Frame = +3

Query: 186 SXLAYGSSLTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQK 365
           S + YGSS++ +SMKVIA S+G+ +L DDAAKELA+DV+ +LK IVQDA KFM+H+KRQK
Sbjct: 13  SSMLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQK 72

Query: 366 LSITDIDHALQXK 404
           LS+ DID +L+ +
Sbjct: 73  LSVRDIDMSLKVR 85


>AE014296-3177|AAF49139.2|  606|Drosophila melanogaster CG32211-PA
           protein.
          Length = 606

 Score =  108 bits (259), Expect = 7e-24
 Identities = 48/89 (53%), Positives = 61/89 (68%)
 Frame = +1

Query: 388 MPCXIKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVR 567
           M   ++N E QYGF+  D +PFRFASGGGRELHF                 K+PLD+++R
Sbjct: 80  MSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLR 139

Query: 568 AHWLSVDGVQPTVPENPPPLSKEAQKLES 654
           +HW  V+GVQPTVPENPPPLSK++Q L+S
Sbjct: 140 SHWFVVEGVQPTVPENPPPLSKDSQLLDS 168



 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 45/73 (61%), Positives = 61/73 (83%)
 Frame = +3

Query: 186 SXLAYGSSLTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQK 365
           S + YGSS++ +SMKVIA S+G+ +L DDAAKELA+DV+ +LK IVQDA KFM+H+KRQK
Sbjct: 13  SSMLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQK 72

Query: 366 LSITDIDHALQXK 404
           LS+ DID +L+ +
Sbjct: 73  LSVRDIDMSLKVR 85


>L25443-1|AAA16536.1|  592|Drosophila melanogaster TAFII60 protein.
          Length = 592

 Score =  105 bits (253), Expect = 4e-23
 Identities = 47/89 (52%), Positives = 60/89 (67%)
 Frame = +1

Query: 388 MPCXIKNNECQYGFIQPDSLPFRFASGGGRELHFXXXXXXXXXXXXXAPPPKVPLDVSVR 567
           M   ++N E QYGF+  D +P RFASGGGRELHF                 K+PLD+++R
Sbjct: 66  MSLKVRNVEPQYGFVAKDFIPLRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTLR 125

Query: 568 AHWLSVDGVQPTVPENPPPLSKEAQKLES 654
           +HW  V+GVQPTVPENPPPLSK++Q L+S
Sbjct: 126 SHWFVVEGVQPTVPENPPPLSKDSQLLDS 154



 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 44/71 (61%), Positives = 60/71 (84%)
 Frame = +3

Query: 192 LAYGSSLTLDSMKVIAXSVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLS 371
           + YGSS++ +SMKVIA S+G+ +L DDAAKELA+DV+ +LK IVQDA KFM+H+KRQKLS
Sbjct: 1   MLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLS 60

Query: 372 ITDIDHALQXK 404
           + DID +L+ +
Sbjct: 61  VRDIDMSLKVR 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,986,201
Number of Sequences: 53049
Number of extensions: 521267
Number of successful extensions: 1361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)