Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D08
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   4.1  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   4.1  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   9.5  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 356 YGSEXXFMLEGIIPSATLLTGVSQPDHVSQFDA 454
           YG     +LE I+    +L+G+   +H S+F A
Sbjct: 407 YGCSSTTLLEAILTEGAVLSGIINSNHNSEFYA 439


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 163 LEIKTLPLKLTQWIPLNSVLNSIIIFLHRILNCSTKPEK 47
           L   TLPL  T+ + L  VL  ++ F+H   N +   EK
Sbjct: 368 LRNNTLPLLTTKRVFLRGVLEELLWFIHGDTNANHLSEK 406


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
 Frame = +2

Query: 95  YRIKNGIQWNPLCQF----QRECFYFQMDFKTRKLFQRKKQIYCFVNYFNEECWYLTYXK 262
           Y  ++ +   PL  F    + +C  F+   +    FQR   ++C   Y      Y +  K
Sbjct: 143 YDARSSLPQGPLSPFYVKMEHQCKVFEAQVRLAAEFQRAVSVHCVQTY---ALLYSSLAK 199

Query: 263 NWEA----IKTKLNELNQRSY 313
            W+      KTK+ ++ +  Y
Sbjct: 200 FWDGRWIPSKTKIRKMKKEEY 220


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 57  FVLQFNIL*RKIIIELRTEFNGIHCVSFKGSVFISKWIS 173
           F+ QF+++ ++++I +  + N ++C   +     SK IS
Sbjct: 448 FLAQFHLVIKRVLINIHAQPNAVYCRLMEEVGMTSKSIS 486


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 510 LLNPEP*TS*TGSHNQFIPECKGLFINFKNSYXXEISPHVAIV 638
           LLNP P +S T S   F P    + IN   ++  +++  +A++
Sbjct: 19  LLNPPPPSSSTRSGRLFAPLSHTMRINHAATFTPDLAKRLAVL 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,706
Number of Sequences: 5004
Number of extensions: 38484
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)