Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D05
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   1.6  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.6  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   6.6  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    24   8.7  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 399 IAYNINKSNNLLQAVIGTTTFSGVRQLLSX*FQPTCLHFAGE 274
           + Y+ +KSN   ++ IG     G        F+  C+++A E
Sbjct: 438 LMYSADKSNQTAKSFIGVLDIYGFEHFKKNSFEQFCINYANE 479


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 113 TPLARPMKFPYTFSAKV 163
           TPL  PM  PY F+ KV
Sbjct: 101 TPLPHPMLIPYLFAPKV 117


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 21   QTSLRKLKRLSQIINVFSTLFFIYLRPHD 107
            Q  L   +R + IIN FS  F   L P+D
Sbjct: 1235 QDVLAPKERANNIINAFSPFFLELLHPND 1263


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 260 HKMSNSPAKCKQVG*NXKERSCRTPLNVVVPIT-ACNKLFDL 382
           H  SNSP KC++   + K  S   PL  V  I+ +   +FDL
Sbjct: 82  HDNSNSPPKCRKTCSSNKVYSNEVPLLFVFVISISIVCIFDL 123


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 97  ALTMSDAPGSP-HEVPLHVLSEGRSV 171
           ALT SD PG+P H++   +L+ G  V
Sbjct: 278 ALTKSDRPGTPIHKIYEQLLNNGIQV 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,709
Number of Sequences: 5004
Number of extensions: 34957
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)