Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D04
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    57   1e-09
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    56   2e-09
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    53   2e-08
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   5.4  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.2  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.2  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    25   7.2  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 29/78 (37%), Positives = 42/78 (53%)
 Frame = +1

Query: 115 LPVTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 294
           + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGSG              
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPA 79

Query: 295 XXXXXXXEEKKEXXKXEE 348
                   E+KE  K EE
Sbjct: 80  AADGEAPAEEKEEAKEEE 97


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 29/78 (37%), Positives = 41/78 (52%)
 Frame = +1

Query: 115 LPVTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 294
           + +T +K+ ++ KA  V VEP W  +FAKALEG ++++L+ NIGS               
Sbjct: 20  IEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAA 79

Query: 295 XXXXXXXEEKKEXXKXEE 348
                  EEKKE  K EE
Sbjct: 80  APAEAAEEEKKEEAKEEE 97


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 LPVTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGS-GVXXXXXXXXXXXX 291
           + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGS               
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAA 79

Query: 292 XXXXXXXXEEKKEXXKXEE 348
                   EE+KE  K EE
Sbjct: 80  AAGGEAAAEEQKEEAKEEE 98


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 172 LHVQPPLSRWWKFS 131
           LHVQ  L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 20  GLRQLARSKLKMVSKAELACVYSAL 94
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 229 GHGH*CLPRLWRTDL 185
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLIT 237
           ++ E+IS IL  +  +   +W      AL G+N++D I+
Sbjct: 133 LSSEEISKILNISK-YKSSHWRIFSVSALTGLNIKDAIS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,748
Number of Sequences: 5004
Number of extensions: 24739
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)