Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_D04
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 64 4e-11
11_01_0483 - 3718104-3718802,3718817-3719308 31 0.33
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 1.7
04_01_0596 - 7852529-7855185,7855545-7855581 29 1.7
07_01_0358 - 2631214-2632992 29 2.3
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888... 28 4.0
12_02_0821 + 23443733-23444425 27 5.3
04_04_0935 - 29509135-29511732 27 7.1
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 27 9.3
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 27 9.3
03_04_0205 - 18485933-18488446 27 9.3
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 27 9.3
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = +1
Query: 115 LPVTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG 252
+P+T EKI+T++KAA + VE YWPGLFAK LE +V DLI ++GSG
Sbjct: 20 IPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG 65
>11_01_0483 - 3718104-3718802,3718817-3719308
Length = 396
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 16 LRPTATCTFKTKNGVKS*ISMCLLCSHPGWMMMLP-VTGEK 135
LRP AT T +GV + +PGW+M++P T E+
Sbjct: 4 LRPVATATATLPSGVPPPAAAAAARGYPGWVMLMPYATAER 44
>05_03_0415 - 13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 81 FTLLSSWLDDDVARNW*ENFHHLESGGCTC 170
FT +S +D ++ FHH ++G C+C
Sbjct: 972 FTYISKIVDHEIVVRDPSRFHHFKNGSCSC 1001
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 81 FTLLSSWLDDDVARNW*ENFHHLESGGCTC 170
FT +S +D ++ FHH ++G C+C
Sbjct: 864 FTYISKIVDHEIVVRDPSRFHHFKNGSCSC 893
>07_01_0358 - 2631214-2632992
Length = 592
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 75 HV-FTLLSSWLDDDVARNW*ENFHHLESGGCTCR 173
HV F L+S D ++ FHH + G C+C+
Sbjct: 556 HVAFNLISKVYDREIIVRDRSRFHHFQGGACSCK 589
>08_02_0907 -
22485714-22486859,22487836-22487882,22488456-22488830,
22489339-22489500,22490325-22490439
Length = 614
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = -2
Query: 240 VGDQVTDIDAFQGFGEQTWPIWLYMYSRRFQDGGNFLTSYGQHHHPARMRAE*THANSAF 61
+G +AF G P+ + ++ ++ GN + S+ + P MRA + +F
Sbjct: 279 IGSSSVAAEAFAGGSSSAAPLQIPVFQQQSTGNGNTVISFSNNASPMAMRAPTDNTMISF 338
Query: 60 DTI 52
+ +
Sbjct: 339 NNV 341
>12_02_0821 + 23443733-23444425
Length = 230
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 85 LCSHPGWMMMLPVTGEKIS 141
LC HP W ++ P +G+ IS
Sbjct: 34 LCPHPVWPLVTPTSGQPIS 52
>04_04_0935 - 29509135-29511732
Length = 865
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 78 VFTLLSSWLDDDVARNW*ENFHHLESGGCTC 170
V L+SS D + FHH +SG C+C
Sbjct: 831 VIKLISSVTDREFVIRDGVRFHHFKSGSCSC 861
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 91 SH-PGWMMMLPVTGEKISTILKAAAVHVEPYWPGLFAKAL 207
SH P + M+ KI T+++ A H PY+ G F +AL
Sbjct: 618 SHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEAL 657
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 204 GFGEQTWPIW--LYMYSRRFQDGGNFLTSYG 118
G G+ +W +Y +S + QDG NF+ G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657
>03_04_0205 - 18485933-18488446
Length = 837
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 81 FTLLSSWLDDDVARNW*ENFHHLESGGCTC 170
FT++S + ++ FHH E G C+C
Sbjct: 804 FTVISKIVKREIIVRDINRFHHFEDGKCSC 833
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 188 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 277
VC +P SP +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,125
Number of Sequences: 37544
Number of extensions: 191536
Number of successful extensions: 460
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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