Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_D04
(454 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 69 8e-12
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 69 8e-12
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 69 8e-12
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 69 8e-12
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 69 8e-12
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 69 8e-12
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 67 3e-11
EF560746-1|ABQ59056.1| 979|Homo sapiens KIAA1394 protein protein. 30 4.3
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 68.9 bits (161), Expect = 8e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 68.9 bits (161), Expect = 8e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 68.9 bits (161), Expect = 8e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 68.9 bits (161), Expect = 8e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 68.9 bits (161), Expect = 8e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 68.9 bits (161), Expect = 8e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 66.9 bits (156), Expect = 3e-11
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 294
VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI ++G+G
Sbjct: 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAP 82
Query: 295 XXXXXXXEEKKEXXKXEEPXES 360
EEKK K EE ES
Sbjct: 83 STAAAPAEEKKVEAKKEESEES 104
>EF560746-1|ABQ59056.1| 979|Homo sapiens KIAA1394 protein protein.
Length = 979
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 49 KNGVKS*ISMCLLCSHPGWMMMLPVTGEK-ISTILKAAAVHVEP 177
+ GV+S +M LLC P W+M +P G+ +T+L + AV P
Sbjct: 144 EGGVQSPGNM-LLCLSPAWLMKVPAPGQPGEATLLVSKAVSFHP 186
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,304,534
Number of Sequences: 237096
Number of extensions: 940471
Number of successful extensions: 1480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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