Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D04
         (454 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    91   6e-19
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    91   6e-19
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    91   6e-19
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    89   3e-18
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    28   6.8  
AY084191-1|AAL89929.1|  291|Drosophila melanogaster RE73746p pro...    27   8.9  
AE014297-4045|AAF56653.2|  341|Drosophila melanogaster CG6277-PA...    27   8.9  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 47/80 (58%), Positives = 52/80 (65%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 300
           VTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGV               
Sbjct: 23  VTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAA 82

Query: 301 XXXXXEEKKEXXKXEEPXES 360
                 +K+E  K EE  +S
Sbjct: 83  APAAESKKEEKKKEEESDQS 102



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 53  MVSKAELACVYSALIL 100
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 47/80 (58%), Positives = 52/80 (65%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 300
           VTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGV               
Sbjct: 23  VTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAA 82

Query: 301 XXXXXEEKKEXXKXEEPXES 360
                 +K+E  K EE  +S
Sbjct: 83  APAAESKKEEKKKEEESDQS 102



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 53  MVSKAELACVYSALIL 100
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 47/80 (58%), Positives = 52/80 (65%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 300
           VTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGV               
Sbjct: 23  VTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAA 82

Query: 301 XXXXXEEKKEXXKXEEPXES 360
                 +K+E  K EE  +S
Sbjct: 83  APAAESKKEEKKKEEESDQS 102



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 53  MVSKAELACVYSALIL 100
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 46/80 (57%), Positives = 51/80 (63%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 300
           VTGEKI+TILKAA V VEPYWPGLFAKALE INV+DLITNIGSGV               
Sbjct: 23  VTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAAPAAAAA 82

Query: 301 XXXXXEEKKEXXKXEEPXES 360
                 +K+E  K EE  +S
Sbjct: 83  APAAESKKEEKKKEEESDQS 102


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 236 VIRSRTLMPSKALANRPGQYGSTCTAAAFKMVEI-FSPVTGNIIIQP 99
           +I S+ L+P+K   N P QY  T    A K  +I FS  +    I+P
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKINFSSHSHQSEIKP 301


>AY084191-1|AAL89929.1|  291|Drosophila melanogaster RE73746p
           protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  SSWLDDDVARNW*ENFHHLESGGCT 167
           S W+D DVA  W E    LES G T
Sbjct: 40  SEWVDMDVAEQWMEAQELLESRGLT 64


>AE014297-4045|AAF56653.2|  341|Drosophila melanogaster CG6277-PA
           protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  SSWLDDDVARNW*ENFHHLESGGCT 167
           S W+D DVA  W E    LES G T
Sbjct: 40  SEWVDMDVAEQWMEAQELLESRGLT 64


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,923,513
Number of Sequences: 53049
Number of extensions: 300840
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)