Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D04
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    74   6e-14
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    70   7e-13
U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical p...    27   4.8  
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    27   8.4  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        27   8.4  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 31/44 (70%), Positives = 40/44 (90%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG 252
           +TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LIT++ SG
Sbjct: 23  ITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSG 66



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 53  MVSKAELACVYSALIL 100
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 30/44 (68%), Positives = 39/44 (88%)
 Frame = +1

Query: 121 VTGEKISTILKAAAVHVEPYWPGLFAKALEGINVRDLITNIGSG 252
           +TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LIT++ SG
Sbjct: 23  ITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSG 66



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 53  MVSKAELACVYSALIL 100
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical
           protein F21C10.4 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 161 AAAFKMVEIFSPVTGNIIIQPG*EQSKHMLIQLLTPFLVLN 39
           ++AF+   +F P T N     G   S H++IQ  TP +  N
Sbjct: 70  SSAFRS-NVFKPTTSNSYFATGTSGSTHVIIQPATPIIYDN 109


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 105 DDDVARNW*ENFHHLESGG-CTCRAILARSVRQSLGRHQC 221
           DD+V + +  +   L  GG C C    +R +   +GR+ C
Sbjct: 271 DDEVKQRYFYSMGELAVGGRCKCNGHASRCIFDKMGRYTC 310


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 105 DDDVARNW*ENFHHLESGG-CTCRAILARSVRQSLGRHQC 221
           DD+V + +  +   L  GG C C    +R +   +GR+ C
Sbjct: 271 DDEVKQRYFYSMGELAVGGRCKCNGHASRCIFDKMGRYTC 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,840
Number of Sequences: 27780
Number of extensions: 144517
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)