Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D02
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1071 - 8755157-8755510                                           55   4e-08
06_01_1072 - 8756386-8756706                                           48   4e-06
01_01_0530 - 3877337-3877396,3877709-3877837,3877954-3878221,387...    28   5.0  
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458...    28   6.6  

>06_01_1071 - 8755157-8755510
          Length = 117

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 29/72 (40%), Positives = 41/72 (56%)
 Frame = +2

Query: 179 RALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKNTAQGTVLGHMQXTLDKIEVMMNWLK 358
           +A+   V GRVQGV FR +T E A+ LGL GW +N   GTV   +     K++ M++   
Sbjct: 26  KAVRVVVKGRVQGVGFRDWTAETAESLGLAGWVRNRRDGTVEALLSGDPAKVDEMVSRHL 85

Query: 359 TTGSPSSKIDKV 394
             GSP+S +  V
Sbjct: 86  PVGSPASAVTAV 97


>06_01_1072 - 8756386-8756706
          Length = 106

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +2

Query: 179 RALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKNTAQGTVLGHMQXTLDKIEVMMN 349
           +A+   V GRVQGVFFR +T E A  LGL GW +N   GTV   +     +++ M++
Sbjct: 15  KAVRVVVKGRVQGVFFRDWTVETARALGLAGWVRNRRDGTVEALLSGDPARVDEMVS 71


>01_01_0530 -
           3877337-3877396,3877709-3877837,3877954-3878221,
           3878385-3878776,3879003-3879119,3879209-3879304,
           3879775-3879948,3880077-3880243,3880800-3880965,
           3881040-3881178,3881767-3881901,3882157-3882161
          Length = 615

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 173 MFRALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKNTAQGTVLGHMQXTLDKIEVMMNW 352
           M RA   E++G++QGVF     ++    L L G C  +++ T    +    D ++  +  
Sbjct: 309 MNRASSLEIYGKMQGVFIEMDCEKNMPLLVLYGKC--SSKSTYRSKIVLQTDSVDKELKS 366

Query: 353 LK 358
           LK
Sbjct: 367 LK 368


>01_06_0840 + 32343700-32344138,32345329-32345419,32345584-32345866,
            32346023-32346097,32346470-32346514,32346889-32346979,
            32347060-32347118,32347621-32347704,32348109-32348168,
            32348585-32348637,32348724-32348757,32349334-32350335,
            32350477-32351035,32351873-32352372,32352793-32353200
          Length = 1260

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 72   LLSLLFKSPLNAPHFINTGSDESAALIAVLSXRLCFG 182
            L+SLL   PLNAPHF  + +    A   + S R   G
Sbjct: 1193 LMSLLSDKPLNAPHFQKSFNHPDGASGHIRSSRTSVG 1229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,125
Number of Sequences: 37544
Number of extensions: 229402
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)