Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D02
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   7.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   7.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.4  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  LLYSFTIVTF*VATKCSA 112
           LL+SF ++   + +KC A
Sbjct: 15  LLFSFVVILLIIPSKCEA 32


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 152 CSPIIXTMFRALDFEVFGRVQGVFFRKYTKEQADKL 259
           C  ++ T  R LDF   GRV+    +    ++AD++
Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRM 359


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  LLYSFTIVTF*VATKCSA 112
           LL+SF ++   + +KC A
Sbjct: 15  LLFSFVVILLIIPSKCEA 32


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 250 GLLFGIFSEENSLNPAKHFKIQSPKHSRYD 161
           GLL   F +++S     HF    P  S+Y+
Sbjct: 334 GLLIYDFFKDSSFRIQHHFFYPDPLASKYE 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,730
Number of Sequences: 438
Number of extensions: 2577
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)