Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_D01
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    29   3.7  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    28   6.5  
01_02_0117 - 11262246-11262477,11264094-11264212                       28   6.5  

>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 275 YTVPWGFNGFINYIK 319
           Y VPWG  G +NYIK
Sbjct: 377 YIVPWGMYGCVNYIK 391


>05_07_0328 +
           29286109-29286120,29286982-29287146,29288427-29288589,
           29288625-29288903,29289047-29289122,29289725-29289787,
           29292116-29292164,29292413-29292504,29293017-29293068,
           29293209-29293271,29293382-29293431,29293941-29294016,
           29294444-29294656,29294763-29294869,29294966-29295074,
           29295489-29295689,29295773-29296033,29296154-29296171,
           29296287-29296397,29296755-29297030,29297108-29297382,
           29297814-29298165,29298371-29298655,29298715-29299261,
           29301658-29301781,29301871-29301946,29302062-29302136,
           29302300-29302353,29302833-29302892,29302977-29303093,
           29303228-29303361,29303480-29303682,29303879-29303976,
           29304358-29304461,29304537-29304702,29304803-29304925,
           29305047-29305129,29305217-29305358,29305523-29305549,
           29305784-29305854,29305930-29306518
          Length = 2046

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -1

Query: 162 IKMLSYLSHVTVDNYKSESQTLYCQESVNKHGLYIP 55
           + M   L    ++ + +++QTL+CQ ++N   + +P
Sbjct: 629 MNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVP 664


>01_02_0117 - 11262246-11262477,11264094-11264212
          Length = 116

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 182 IRIHTSTRTLKARXHIILFKARFNLNSARDRYTVPWGFNGFINYIKITRLDLIFY 346
           I+  T+ RT  AR H+     R +  S  D     +GF+  +N + + R D +FY
Sbjct: 58  IKPGTNLRT-DARMHMASSNGRSSNGSQGDSKLELFGFDSLVNILGLKRYDDLFY 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,368
Number of Sequences: 37544
Number of extensions: 217715
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)