Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C23
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 29 0.32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.96
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 1.3
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.2
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 2.9
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.9
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 5.1
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 5.1
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 5.1
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 25 6.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.0
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 9.0
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.32
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 138 KELARLKKMLGVKDEEKPAGSEV 206
+E+A L+KMLG+K ++K A S++
Sbjct: 115 REIAHLEKMLGIKSKDKSAHSKI 137
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 0.96
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 244 SPASRNITCSDSITSLPAGFSSSLTPSIFFNRANS--FTAYRSRLIALH 104
+PAS T + S++S + SSS TPS + A S + S LIAL+
Sbjct: 749 TPASSTSTTTSSVSSRQSSSSSSFTPSSAISTAKSSFVLSTLSILIALY 797
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 153 LKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLXDIEKDNEXVEMSSDDENVVV 332
LK +G+K+ E S +SE ++F + D K L D+E + + S +V
Sbjct: 215 LKSYIGLKNMEYRVRSSFNQSETIVFSGSED---GKVYLWDLENETQITSTSVVGTPIVT 271
Query: 333 D 335
D
Sbjct: 272 D 272
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 KKVLXDI-EKDNEXVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 398
K VL D+ +KDNE SD+E+ V D E F+ K N +Y
Sbjct: 160 KGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRY 207
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 241 PASRNITCSDSITSLPAGFSSSLTPSIF 158
P S + S SIT++ +G SSS PS F
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTF 573
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 354 FSCRLHYRPQRFHHPNSFRRXHCPF 280
F C LH + + HP S R HCPF
Sbjct: 418 FDCGLH-KCSKTCHPISETRAHCPF 441
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 93 WKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVME 212
WK K IK E V+++ LKK ++ E P S + +
Sbjct: 211 WKNKVEQIKNESRLVRKIQELKK--SYQESEHPIVSSIRD 248
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 LSRDYLQKRVAL--LQNIFVFKTQWRNRLGADGSENAGRSNENGMQ*KN 144
LS ++ +K+ L LQN + +T R +G+DGS + E M K+
Sbjct: 244 LSENFQRKQEILSGLQNNVILRTNNRKPVGSDGSNSNFNGGEEQMDSKD 292
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 247 KSPASRNITCSDS-ITSLPAGFSSSLTPSIFFNRANSFTAYRS 122
++P + I+ +S ++S P +SSLTP N A ++A+RS
Sbjct: 175 QTPRAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRS 217
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 184 RNQLEVRLWNLSKLYS 231
RNQ ++ +WNLSKL S
Sbjct: 325 RNQPDIIIWNLSKLAS 340
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 241 PASRNITCSDSITSLPAGFSSSLTP 167
P R+ + S+ +TS+ SSSL+P
Sbjct: 359 PTKRSFSMSEIVTSMQMSISSSLSP 383
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 447 YRLYLFWRSYVCATKPGTVRSDLSR 373
Y +++WR T P T+ DL R
Sbjct: 213 YHSWVYWRDVDVETAPNTILEDLMR 237
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 174 KDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLXDIEKDNEXVEMS--SDDENVVVDSEG 344
K+EE+P SE +++ + D D ++ L + ++ ++++ S+D + + +EG
Sbjct: 503 KEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEG 561
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 98 LPSAPNRFRHCVLKTK 51
LPS PNR H VL K
Sbjct: 598 LPSRPNRMNHSVLNEK 613
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 87 SRWKRKCRAIKRERYAV 137
SRWK+K + +K E Y V
Sbjct: 119 SRWKKKIQLLKSEDYTV 135
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 244 SPASRNITCSDSITSLPAGFSSSLTPSIFFNRANSFTA 131
+P+S + T S S +S SSS+T SI + ++S ++
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSS 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,490
Number of Sequences: 5004
Number of extensions: 31232
Number of successful extensions: 150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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