Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C23
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 33 0.18
12_02_0604 + 20920609-20922144 32 0.32
07_01_0463 + 3502708-3503535 31 0.42
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 29 1.7
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 29 2.2
06_02_0105 - 11893666-11895483,11895661-11896422 28 3.9
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 3.9
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 28 5.2
04_04_1695 + 35433975-35437040 28 5.2
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 27 6.8
07_03_1228 - 25009736-25010965 27 6.8
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 27 9.0
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 234 DAGDLKKSKKVLXDIEKDNEXVEMSSDDENVVVD-SEGGKKRVFNTKTLKDQNGQ 395
D+G KK KK + D + +E+ ++EN D ++G ++ V N + +++G+
Sbjct: 279 DSGKKKKKKKAARKMSSDEDDIEVEENEENTDNDGNDGNEEHVENEENEGNKSGE 333
>12_02_0604 + 20920609-20922144
Length = 511
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 111 AIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQV-IFLDAGDLKKSKKVLXDIEKD 287
A+K+ R + E+ RL LGV +EK A ++ ++E+ I + G+LK+ + + +
Sbjct: 307 AVKKHRASEAEVERLCAELGVLTKEKEAAAKAFDAEKAGIMREFGELKQKVEEIQASKGA 366
Query: 288 NEXVEMSSDDENVVVDSE 341
E D + V + +E
Sbjct: 367 AEEAGREKDAQAVKLRNE 384
>07_01_0463 + 3502708-3503535
Length = 275
Score = 31.5 bits (68), Expect = 0.42
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 159 KMLGVKDEEKPAGSEV---MESEQVIFLDAGDLKKSKKVLXDIEKDNEXVEM-SSDDENV 326
K G +DE+K EV + ++ + LD+ D KS D +KD E + DDE+
Sbjct: 37 KSSGDEDEKKEIEIEVKAKIVDKEEVKLDSDDGAKSAVKSKDSKKDKENKKSDKKDDEHD 96
Query: 327 VVDSEGGKKRVFNTKTLKDQN 389
D EG KK + KD++
Sbjct: 97 DEDEEGKKKEKEMKEKKKDKS 117
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 72 AKSIRSRWKRKCRAIKRERY--AVKELARLKKMLGVKDEEKPAGSEVME 212
A S S ++RK RA++RE+Y V++ + +G + GS++M+
Sbjct: 108 ALSSTSEYRRKLRAVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMD 156
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 219 QVIFLDAGDLKKSKKVLXDIEKDNEXVEMSSDDENVVVDSEGGKKRVFN 365
QV+F +A +L K KK+ + DNE ++ S+ E + GG+K FN
Sbjct: 60 QVLFQNAMELLK-KKLEFACDIDNEGQKLMSNMEMIQAVLRGGEKMKFN 107
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 93 WKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLX 272
WK + ++E V EL RLKK + E +E +E+ +V + + +K+K+++
Sbjct: 245 WKTRITEPEQENEIVLELDRLKKEI----SESKRQAEAVEAAKVPL--SNEYEKTKRLIE 298
Query: 273 DIEKDNEXVE 302
+E D E +
Sbjct: 299 GLEHDLEKAQ 308
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 243 DLKKSKKVLX-DIEKDNEXVEMSSDDENVVVDSEGG 347
DLK S++ D ++D+ V++ DDE +V D+E G
Sbjct: 858 DLKGSRRQSGSDDDEDDACVDIEDDDETIVEDAEVG 893
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 174 KDEEKPAGSEVMESEQVIFLDAGDLKK---SKKVLXDIEKDNEXVEMSSDDENVVVDSEG 344
++EE+ A ++M + D ++K SKKV E D V+ +DD NV D +G
Sbjct: 245 EEEEEGAVGDIMYKDFFEEADDQKVRKKGGSKKVQFKDEPDEPEVDDKNDDGNVSQDEQG 304
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 63 NAMAKSIRSRWKRKCRAIKRERYAVKELARLKKMLGVK 176
N +AKSI ++W RA+ + A E +LK K
Sbjct: 545 NDLAKSIEAKWFSLSRALTADEAAAAEATKLKSSFASK 582
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 27.5 bits (58), Expect = 6.8
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +3
Query: 81 IRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKS- 257
I SR KR A ++E+ + + A+ G K ++ E ++ + +K+
Sbjct: 619 IYSRPKRTWFATEKEKKLLAKAAKESTSQG-KSNSGVISAQQAEDLRLKEKKRREREKNL 677
Query: 258 -KKVLXDIEKDNEXVEMSSDDENVVVDSEGGKK 353
+K +E + E +E S+DE +S+GGKK
Sbjct: 678 PRKKRRRLEAEREMLEDESEDEEEAKESKGGKK 710
>07_03_1228 - 25009736-25010965
Length = 409
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 162 MLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKV----LXDIEKDNEXVEMSSDDENVV 329
MLGVK S ++E+ + ++ ++S K+ + + + +N EM DDE
Sbjct: 236 MLGVKMLGGVGNSHILETGATLNKESTTEERSTKIGESYIYETKVENTNEEMVDDDEGEE 295
Query: 330 VDSEGGKKRVFNTKTLKDQNGQYP 401
EGG++ + +++ + P
Sbjct: 296 EPEEGGEEEEEEEEEEEEEEEEEP 319
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Frame = +3
Query: 174 KDEEKPAGSEVMESE----QVIFLDAGDLKK-----SKKVLXDIEKDNEXVEMSSDDENV 326
++EE+ A ++M+ + + F +A D K SKKV E D V+ +DD NV
Sbjct: 234 EEEEEGAVGDIMKDDFSRYKDFFQEADDQKVRKKGGSKKVQFKDEPDKPEVDDKNDDGNV 293
Query: 327 VVDSEG 344
D +G
Sbjct: 294 SQDEQG 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,333
Number of Sequences: 37544
Number of extensions: 189385
Number of successful extensions: 568
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -