Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C22
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   195   3e-50
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  195 bits (475), Expect = 3e-50
 Identities = 90/168 (53%), Positives = 123/168 (73%)
 Frame = +1

Query: 139 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXKREIFKRAEQYVKEYRIKERD 318
           +KK+P VPE+VLK             Q  +   +   + K + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 319 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNX 498
            +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LN 
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 499 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIV 642
           AT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IV
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIV 171


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 251 RXRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 421
           + R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
            C47E8.8 protein.
          Length = 1675

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 220  VTLKRRSSAIKXKREIFK----RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 387
            V +  + S    K +I+K    R +Q VKE  I++R   +LA       NY +    ++ 
Sbjct: 1127 VEITEKISVPAIKTDIWKLYQARMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRII 1186

Query: 388  FVIRIR 405
            FV+ ++
Sbjct: 1187 FVLSVK 1192


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
            protein C47E8.8 protein.
          Length = 1675

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 220  VTLKRRSSAIKXKREIFK----RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 387
            V +  + S    K +I+K    R +Q VKE  I++R   +LA       NY +    ++ 
Sbjct: 1127 VEITEKISVPAIKTDIWKLYQARMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRII 1186

Query: 388  FVIRIR 405
            FV+ ++
Sbjct: 1187 FVLSVK 1192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,183
Number of Sequences: 27780
Number of extensions: 251539
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)