Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C21
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    58   3e-10
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.6  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    24   6.3  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    24   6.3  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    23   8.3  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    23   8.3  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    23   8.3  

>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 58.0 bits (134), Expect = 3e-10
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +1

Query: 142 QPRLTYKTVSGVNGPLVILDEVKFPXXXXXXXXXXXMEPLRSGQVLXVSGSKAVVQVF 315
           +PRL+Y TV+ + GPLVILD ++ P              +RSGQVL V+G KA+VQVF
Sbjct: 19  KPRLSYNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVF 76


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 282  LEYLTRTKGFHXQALAVRSQRTWELDFIQDDERTVYTRHSL 160
            L YL++T G H   + +          + +DE TVY +  L
Sbjct: 2485 LVYLSKTYGLHHYCILLLENSLQNNPGLSEDELTVYHKSCL 2525


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -1

Query: 279 EYLTRTKGFHXQALAVRSQRTWELDFIQDDERTVYTRHSLVSEPGLGNEVXW 124
           ++ T+T+GF  +   ++        FI +D  T+   HS ++   + + + W
Sbjct: 460 QFNTKTEGFLLRIADIQENLIQSGSFITEDYITIEKNHSHLNSEKVYSFIGW 511


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 69  MAKVISHAQATXEHVLAVSXALHFPAQAH 155
           ++ +++  QA  +H+L +  AL  P +AH
Sbjct: 208 VSNLVNRGQAQLQHMLNMITALQKPKRAH 236


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -1

Query: 297 FGAADLEYLTRTKGFHXQALAVRSQRTWELDFIQDDERTVYTRHSLVSEPGL 142
           FG  DLE        H +++A+     WEL       +T     S+ +E G+
Sbjct: 347 FGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGM 398


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 313 TLGRRLWSR*PXVPDQNEGVPXASFSCTISE 221
           +L RR W + P  P  N        SC  SE
Sbjct: 28  SLSRRNWKKPPPFPSTNASYAPVIRSCDSSE 58


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +3

Query: 66  KMAKVISHAQATXEHVLAVSXALHFPAQAHLQDCVWCKRSSRHLG*SQVPKFSEIVQLKL 245
           K AK+I  ++A               AQA +   V CK    + G    P+   +V+   
Sbjct: 125 KKAKIIPGSEARVFVGYDSRSTSEILAQAVIDGIVVCKAKYENFGLLTTPQLHYMVKASQ 184

Query: 246 AXGTP 260
             GTP
Sbjct: 185 TYGTP 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,738
Number of Sequences: 5004
Number of extensions: 22551
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)