Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C21
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 55 1e-08
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 55 1e-08
11_06_0577 - 25158833-25162864 31 0.25
02_01_0604 + 4497210-4497569,4497637-4497822,4498218-4498573,449... 29 0.77
01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472... 29 1.0
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 27 2.3
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 27 2.3
11_03_0123 + 10318364-10318689,10320035-10320117,10320259-10320644 26 7.1
03_02_0243 - 6744164-6744415,6744518-6745135 26 7.1
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/55 (54%), Positives = 33/55 (60%)
Frame = +1
Query: 151 LTYKTVSGVNGPLVILDEVKFPXXXXXXXXXXXMEPLRSGQVLXVSGSKAVVQVF 315
+ Y+TVSGV GPLVILD+VK P R GQVL V G KAVVQVF
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVF 113
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/55 (54%), Positives = 33/55 (60%)
Frame = +1
Query: 151 LTYKTVSGVNGPLVILDEVKFPXXXXXXXXXXXMEPLRSGQVLXVSGSKAVVQVF 315
+ Y+TVSGV GPLVILD+VK P R GQVL V G KAVVQVF
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVF 73
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 282 LEYLTRTKGFHXQALAVRSQRTWELDFIQDDERTVYTRHSLVSEPG 145
L YLT K H + V ++ ++ ++ DD T+Y R EPG
Sbjct: 45 LMYLTENKASHNDQVRVWMRQVRDIAYVADDCITLYRRDLTPPEPG 90
>02_01_0604 +
4497210-4497569,4497637-4497822,4498218-4498573,
4499042-4499122,4499451-4499610,4499855-4499920
Length = 402
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 309 LDDGFGAADLEYLTRTKGFHXQALAVRSQRTWEL 208
LDD F + DL+Y TK ++ A + ++ WE+
Sbjct: 167 LDDSFWS-DLDYCKNTKNWYCYAKTIAERKAWEV 199
>01_06_0028 -
25746250-25746526,25746839-25746975,25747089-25747292,
25747747-25747855,25747951-25748081,25748156-25748253,
25748827-25749018,25749075-25749177,25749275-25749445
Length = 473
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 155 VSLGWEMKCXGDCQXMFXGRLGVRDHL 75
V + ++ C +CQ F GR+G+R HL
Sbjct: 213 VCVSSQVGCAMNCQFCFTGRMGLRKHL 239
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 288 ADLEYLTRTKGFHXQALAVRSQRTWEL 208
+DLEY RT+ ++ A V Q WE+
Sbjct: 159 SDLEYCKRTENWYCYAKTVAEQGAWEV 185
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 228 SQRTWELDFIQDDERTVYTRHSLVSEPGLGNEVXWRLPXHV 106
S+++ LD+ QD T+ +EPGL NE W P H+
Sbjct: 173 SRQSSTLDWAQDSYWP--TQPIFGAEPGLNNESRWSQPPHL 211
>11_03_0123 + 10318364-10318689,10320035-10320117,10320259-10320644
Length = 264
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 171 RHSL-VSEPGLGNEVXWRLPXHVXW 100
RHS+ VS G+E WR+P + W
Sbjct: 238 RHSIGVSSCASGSEDRWRVPHDIQW 262
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 209 LTSSKMTRGPFTPDTVL*VSLG 144
L S +T P TPDTVL VS G
Sbjct: 30 LDSVTVTHAPLTPDTVLEVSGG 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,732,206
Number of Sequences: 37544
Number of extensions: 160228
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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