Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C21
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    64   2e-11
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    61   2e-10
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    25   8.7  

>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 33/62 (53%), Positives = 41/62 (66%)
 Frame = +1

Query: 130 HFISQPRLTYKTVSGVNGPLVILDEVKFPXXXXXXXXXXXMEPLRSGQVLXVSGSKAVVQ 309
           ++ + PRL Y+TV GVNGPLVIL++VKFP               RSGQVL +S +KAVVQ
Sbjct: 20  NYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAVVQ 79

Query: 310 VF 315
           VF
Sbjct: 80  VF 81


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 31/62 (50%), Positives = 40/62 (64%)
 Frame = +1

Query: 130 HFISQPRLTYKTVSGVNGPLVILDEVKFPXXXXXXXXXXXMEPLRSGQVLXVSGSKAVVQ 309
           ++ ++P+LTY+TV GVNGPLVI+  VKFP              +R GQVL  S +KAVVQ
Sbjct: 32  NYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAVVQ 91

Query: 310 VF 315
           VF
Sbjct: 92  VF 93


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 144 AQAHLQDCVWCKRSSRHLG 200
           A  H Q CVWC  + R  G
Sbjct: 49  AAFHDQKCVWCSHAERKFG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,212,474
Number of Sequences: 27780
Number of extensions: 132479
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)