Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C18
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    32   0.063
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    30   0.25 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   7.2  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   7.2  

>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +2

Query: 119 DNDIKSEEDVGVKYANRCEVCKILXTELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYX 298
           + +I S++ +   +  +CE C +   ELQN   E  K+ E  +  +       K+     
Sbjct: 288 EKEISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASL 347

Query: 299 KSELRLIE 322
           KS++  +E
Sbjct: 348 KSQINFLE 355


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
 Frame = +2

Query: 176  VCKILXTELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYXKSELRLIESLE-GVCDXXL 352
            V K+  ++LQN ++   K  E+I     L  ++ KK  +  +S  R+I  L+ G+ +  +
Sbjct: 1156 VMKLGLSDLQNHVKRISKEMEIISCQRQLLFLENKKLKRTVESSNRVIADLQRGITEKDV 1215

Query: 353  EYNIHK--ERSDSTRFAKGMSQTFKTLHGLVXKGVKV--DLGIPLELWDKPSAEITHMKT 520
                    ERS+       ++++ K+L   + +  +V  +L   +E      A     K 
Sbjct: 1216 SSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLANFRLNKE 1275

Query: 521  QCESLLQXNEIXVE 562
            Q ES LQ  +  V+
Sbjct: 1276 QLESQLQTEKAAVK 1289


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 212 LEETGKVHEVIEIGYSLDDVQPKKKTKYXKSELRLIESLEGV 337
           L E  K +  + + Y+     PKKK +  K E  L+ ++EG+
Sbjct: 115 LSERAKQYGRLGVDYAQVGDAPKKKIREMKLENGLLRNVEGI 156


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 380 DSTRFAKGMSQTFKTLHGLVXKGVKVDLGIPLELWDKPSAEITHMKTQCES 532
           DST+  + + +  K    ++   V V LG PL       + I HM T+C S
Sbjct: 141 DSTKIQQAILELRKCFSRVI---VNVTLGAPLPQQKSLGSSIGHMATRCIS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,761
Number of Sequences: 5004
Number of extensions: 48456
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)