Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C18
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90...    40   0.002
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    31   1.1  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    28   7.5  
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371           28   7.5  
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    27   9.9  
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424...    27   9.9  

>02_01_0124 +
           901034-901153,901455-901481,901713-901792,903739-903811,
           904015-904072,904561-904615,905140-905164,905361-905421,
           907416-907531,907661-907812,907918-908003,908182-908309,
           908451-908501,908774-908860,908964-909033,909351-909407,
           909729-909865,910313-910390,910971-911057
          Length = 515

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +2

Query: 164 NRCEVCKILXTELQNRLE-ETGKVHEVIEIGYSLDDVQPKKKTKYXKSELRLIESLEGVC 340
           ++C  CK +  EL+  +  E  + H  +    +    +  K   Y  SELR++E L+G+C
Sbjct: 31  DKCAACKAVAAELEIGISSEKPRNHLDLRNRLNSKGQREGKVIDYRVSELRVVELLDGLC 90

Query: 341 DXXLEYNIHKERSDSTRFAKGMS-QTFKT 424
           D   +Y + K  S    + K     +FKT
Sbjct: 91  DKMQDYTLQKLESGEKGWVKVADWNSFKT 119


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 242 IEIGYSLDDVQPKKKTKYXKSELRLIE-SLEGVCDXXLEYNIHKERSDSTRFAK 400
           +E G  LD+V+ +KK K    +  L+E   EG  D   E  + KE+ +  +  K
Sbjct: 314 VENGMDLDEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKK 367


>10_06_0105 -
           10790092-10790323,10791092-10791234,10791322-10791429,
           10791796-10791903,10793133-10797686,10798347-10798461,
           10799597-10799724,10799843-10800043,10800158-10800227,
           10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 410 QTFKTLHGLVXKGVKVDLGIPLELWDKPSAEITHMKTQCESL 535
           Q F    G   +G+   LG+ L   ++ SAE++ ++T+C +L
Sbjct: 380 QDFTDKLGTETQGLAQQLGVELMSRNQLSAEVSSLRTECSNL 421


>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
          Length = 1165

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +2

Query: 68  KLICILALLSRNVICRDDNDIKSEEDVGVKYANRCE 175
           KL  +++ ++   +  D+++I + ED+G+K  +RC+
Sbjct: 386 KLHTVMSYIAAFWVTTDESEICALEDIGMKIVDRCD 421


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +3

Query: 60  FSLN*FVSLLFYQGMLFVVTTMILN 134
           +SLN F SL+F QG++FV  T++LN
Sbjct: 134 WSLNIFYSLVFAQGIMFV--TILLN 156


>03_05_0744 +
           27336697-27337131,27337329-27337787,27340852-27342418,
           27342641-27343044
          Length = 954

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 86  ALLSRNVICR--DDNDIKSEEDVGVKYANRCEVCKILXTELQNRLEETGKVHE 238
           +LL + V+    D+++I   ED+G+K   RC+   +    +   L   GK  +
Sbjct: 293 SLLKKQVVLNEGDESEIDGLEDIGLKIVERCDGLPLAIKVVGGLLLNKGKTRD 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,252
Number of Sequences: 37544
Number of extensions: 261909
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)