Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C16
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 223 1e-58
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 217 5e-57
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 31 0.87
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 3.5
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 6.1
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 8.1
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 8.1
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 8.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 223 bits (544), Expect = 1e-58
Identities = 106/135 (78%), Positives = 119/135 (88%), Gaps = 1/135 (0%)
Frame = +3
Query: 162 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 338
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 339 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREXSTRIGRAGTV 518
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRE +TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 519 RRQAVDVSPLRRVNQ 563
RRQAVD+SPLRRVNQ
Sbjct: 130 RRQAVDISPLRRVNQ 144
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 217 bits (530), Expect = 5e-57
Identities = 103/134 (76%), Positives = 117/134 (87%), Gaps = 1/134 (0%)
Frame = +3
Query: 165 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 341
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 342 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREXSTRIGRAGTVR 521
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRE +TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 522 RQAVDVSPLRRVNQ 563
RQAVD+SPLRRVNQ
Sbjct: 132 RQAVDISPLRRVNQ 145
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 30.7 bits (66), Expect = 0.87
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +3
Query: 105 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 284
+AGS+ V S + D+ E+K G + S S+ D +V E P S+ R
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635
Query: 285 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 380
+ +CP ++ + S N+G L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 97 T*PRQAAWLWKPCLYHKPPTF 159
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 96 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 266
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 321 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 431
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 251 VLLFNGNVVLQRHIRDLHIVATPSAEK 171
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 384 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNEVNIL 253
RP+VF + R++ E+ + RLG G YG V+ +LN+ ++
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLNDGRVV 620
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,812
Number of Sequences: 37544
Number of extensions: 316010
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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