Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C15
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   176   2e-45
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   175   3e-45
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.8  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   4.9  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  176 bits (429), Expect = 2e-45
 Identities = 79/133 (59%), Positives = 100/133 (75%)
 Frame = +2

Query: 113 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWP 292
           HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ RWP
Sbjct: 25  HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWP 84

Query: 293 KKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPC 472
            KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP 
Sbjct: 85  VKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPS 144

Query: 473 HIEVCLSEREDAV 511
           HIE+ ++E E+AV
Sbjct: 145 HIEIIVAEEEEAV 157


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  175 bits (427), Expect = 3e-45
 Identities = 79/133 (59%), Positives = 99/133 (74%)
 Frame = +2

Query: 113 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWP 292
           HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ RWP
Sbjct: 25  HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWP 84

Query: 293 KKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPC 472
            KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP 
Sbjct: 85  VKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPS 144

Query: 473 HIEVCLSEREDAV 511
           HIE+ ++E E+AV
Sbjct: 145 HIEIIVAEEEEAV 157


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 278 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 195
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 2   PFLVIF-SLERNNNGSLLSGAG*PCEILQSAWFKPPLLHFKNTYETAMAIRK 154
           PF+ +F  + R+ NGS LSG      I  S W  P ++     +  A A+ K
Sbjct: 460 PFMTVFLKILRDENGSPLSGKESTKVIFSSMW-NPTIVLLLGGFTIAAALSK 510


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 99  NLRCFTLRTHMRPQWQS 149
           +LRCFT R+H+R  +Q+
Sbjct: 498 SLRCFTKRSHLRSVYQT 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,984
Number of Sequences: 5004
Number of extensions: 49653
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)