Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C15
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   210   8e-55
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   109   7e-36
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  210 bits (512), Expect = 8e-55
 Identities = 97/135 (71%), Positives = 113/135 (83%)
 Frame = +2

Query: 110 LHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRW 289
           +HFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRW
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRW 85

Query: 290 PKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 469
           P KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSP
Sbjct: 86  PVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSP 145

Query: 470 CHIEVCLSEREDAVA 514
           CHIEV L+E+ED V+
Sbjct: 146 CHIEVILAEKEDVVS 160



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 48  YSREPDNPAKSCKARGSNLRCFTLRTH 128
           YSR P+N  KSCKARGS+LR     TH
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTH 32


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  109 bits (261), Expect(2) = 7e-36
 Identities = 51/67 (76%), Positives = 57/67 (85%)
 Frame = +2

Query: 314 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 493
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 494 EREDAVA 514
           E+ED V+
Sbjct: 126 EKEDVVS 132



 Score = 59.3 bits (137), Expect(2) = 7e-36
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +2

Query: 110 LHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 229
           +HFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 48  YSREPDNPAKSCKARGSNLRCFTLRTH 128
           YSR P+N  KSCKARGS+LR     TH
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTH 32


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 287 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 448
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 449 NPYMSSPCHIEVCLSER 499
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 476 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 348
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 27   REIIMGRYSREPDNPAKSCKARGSNLRCFTLRTHMRPQWQS 149
            R+I+ GR+  E D    S K R +    F+L  HM+  WQ+
Sbjct: 897  RDILYGRFE-ENDKRQSSVKERCTLDLKFSLNNHMKVGWQT 936


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,786
Number of Sequences: 27780
Number of extensions: 294933
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)