Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C13
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   273   1e-74
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   273   1e-74
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    27   2.4  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   4.2  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   5.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   7.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.6  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  273 bits (670), Expect = 1e-74
 Identities = 125/168 (74%), Positives = 142/168 (84%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGXXRATVDDFPLCVHLVSDEYEQL 218
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG  RA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 398
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRL TGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 399 KPQGTVARVRIGQPIMSVRSTDRWKAQVIEALRRAKFKFPGRQKIYLS 542
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I +S
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVS 168


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  273 bits (669), Expect = 1e-74
 Identities = 125/168 (74%), Positives = 142/168 (84%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGXXRATVDDFPLCVHLVSDEYEQL 218
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG  RA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 398
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRL TGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 399 KPQGTVARVRIGQPIMSVRSTDRWKAQVIEALRRAKFKFPGRQKIYLS 542
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I +S
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVS 168


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
 Frame = +3

Query: 309 LHPFHVIRINKMLSCAGADRLXTGMRGAFGKPQGT----VARVRIGQPIMSVRSTDRWKA 476
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 477 QVIEALRRAKFKFPGRQKI 533
               AL++A F  PG+ +I
Sbjct: 159 LAEHALKQAAFHLPGKYEI 177


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 63  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGXXRATVDDFPLCVHLVSDEYEQLSSEALEA 239
           Y+   N     ++FC  V +  KI   +    RA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 240 G 242
           G
Sbjct: 94  G 94


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 106 VGVYLIPRSVSSIWV 150
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120 DPKIRIFDLGXXRATVDDFPLCV-HLVSDEYEQLSSEALEA 239
           DPK+R+F     RAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 282 KDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMR 386
           +D  H+RM ++ FH   IN MLS +  D     MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,851
Number of Sequences: 5004
Number of extensions: 51423
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)