Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C13
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 269 8e-73
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical pr... 28 5.0
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 27 6.7
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical... 27 8.8
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical... 27 8.8
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ... 27 8.8
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical... 27 8.8
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical... 27 8.8
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 269 bits (660), Expect = 8e-73
Identities = 126/168 (75%), Positives = 136/168 (80%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGXXRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG RA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 398
SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRL TGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 399 KPQGTVARVRIGQPIMSVRSTDRWKAQVIEALRRAKFKFPGRQKIYLS 542
KPQG VARV IG + S+R + IEA RRAKFKFPGRQ I S
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSS 168
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 403 GLPNAPRIPVWSLSAPA 353
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical
protein F01G10.1 protein.
Length = 618
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 384 RGAFGKPQGTVARVRIGQPIMSVRSTDRWKAQVIE--ALRRAKFKFPGRQK 530
R GKP +A+ G+ I + + D W + + + K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 424 FALDSPSCPCALLTGGRHRSSRLCAVPSSSSPDVKR 531
F+LDSP+ P +L GG + C + SP + R
Sbjct: 36 FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71
>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 466 LSVERTDMMGCPMRTRATVP*GLPNAPRIP 377
L++E TD++G P RT+A + N+ IP
Sbjct: 962 LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991
>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 466 LSVERTDMMGCPMRTRATVP*GLPNAPRIP 377
L++E TD++G P RT+A + N+ IP
Sbjct: 962 LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991
>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 466 LSVERTDMMGCPMRTRATVP*GLPNAPRIP 377
L++E TD++G P RT+A + N+ IP
Sbjct: 962 LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991
>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 466 LSVERTDMMGCPMRTRATVP*GLPNAPRIP 377
L++E TD++G P RT+A + N+ IP
Sbjct: 962 LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991
>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 466 LSVERTDMMGCPMRTRATVP*GLPNAPRIP 377
L++E TD++G P RT+A + N+ IP
Sbjct: 962 LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991
>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 466 LSVERTDMMGCPMRTRATVP*GLPNAPRIP 377
L++E TD++G P RT+A + N+ IP
Sbjct: 962 LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,141
Number of Sequences: 27780
Number of extensions: 304939
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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