Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C13
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 90  DTVYFCSTGSISLAGAPW*SLQSDTTTS 7
           D  YFC  G +     P  S QSD+++S
Sbjct: 425 DKCYFCLDGKLPHDDQPPLSPQSDSSSS 452


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 262 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVA 158
           YL+    PAS    LS + +S T  +    SST A
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAA 850


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 399 KPQGTVARVRIGQPIMSVRSTDRWKAQ 479
           KP+   ARV +G   +   ST   K+Q
Sbjct: 269 KPEAAPARVTLGVTSLLTLSTQHAKSQ 295


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 31  RSPWGAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVXXERPL 168
           RSP    + + + T+K   + N+G  G+ +    +  I +   R L
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSNKGPEGIQINATELQKIKLEIHRDL 128


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 31  RSPWGAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVXXERPL 168
           RSP    + + + T+K   + N+G  G+ +    +  I +   R L
Sbjct: 83  RSPDSRDRSNTSNTSKTIILSNKGPEGIQINATELQKIKLEIHRDL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,248
Number of Sequences: 438
Number of extensions: 4108
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)