Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C11
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 172 4e-44
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 172 4e-44
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 28 1.3
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.1
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 6.7
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.9
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.9
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 172 bits (418), Expect = 4e-44
Identities = 76/99 (76%), Positives = 89/99 (89%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+++V G RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+D
Sbjct: 32 GAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKD 91
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G ++YFEDNAGVI N KGEMKGSAITGPVAKECADLWPR
Sbjct: 92 GVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
Score = 30.7 bits (66), Expect = 0.18
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 79 RGRGGSAGAKFRISLGLP 132
RGRG ++G K+R++LGLP
Sbjct: 3 RGRGAASGTKYRMTLGLP 20
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 140 AVINCADNTGRKE----SVCDRSPRYQRSPEQTAG 232
A++NCADN+G K SV R R P + G
Sbjct: 23 AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCG 57
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 172 bits (418), Expect = 4e-44
Identities = 76/99 (76%), Positives = 89/99 (89%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+++V G RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+D
Sbjct: 32 GAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKD 91
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G ++YFEDNAGVI N KGEMKGSAITGPVAKECADLWPR
Sbjct: 92 GVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
Score = 30.7 bits (66), Expect = 0.18
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 79 RGRGGSAGAKFRISLGLP 132
RGRG ++G K+R++LGLP
Sbjct: 3 RGRGAASGTKYRMTLGLP 20
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 140 AVINCADNTGRKE----SVCDRSPRYQRSPEQTAG 232
A++NCADN+G K SV R R P + G
Sbjct: 23 AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCG 57
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -2
Query: 385 MTPALSSKYINXPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 206
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 205 IPWTA 191
P +A
Sbjct: 837 TPLSA 841
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 457 HRSAHSLATGPVMAEPFISPLLLXMTPALSSKYINXPSRLLNGFRCLMTTA 305
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 184 YRFFAPCVV-GAVDYCSQLGDPGRYGISLPRNHHVLS*TFCCIKI 53
Y F++ G +D +LGD YGI P+++ S + C KI
Sbjct: 552 YEFYSRAAAQGDIDAIFKLGDYYYYGIGTPKDY---SKAYTCYKI 593
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 252 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGXFIYFEDNAGV 383
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -1
Query: 386 YDTRIVLKVYKXSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 219
Y+TR + K + +E PLP LF E F C + G QS+
Sbjct: 11 YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,374
Number of Sequences: 5004
Number of extensions: 48979
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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