Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C11
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 180 1e-45
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 180 1e-45
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 180 1e-45
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 59 3e-09
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 32 0.43
06_01_0221 + 1690978-1692171,1692265-1692276 31 0.74
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 31 0.98
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553... 29 3.0
09_04_0149 - 15108796-15109353,15109590-15110756,15111571-151116... 29 4.0
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 4.0
11_01_0746 + 6294277-6294687 28 6.9
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 28 6.9
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 27 9.2
05_07_0365 - 29662703-29662710,29664321-29664378,29664675-296647... 27 9.2
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708 27 9.2
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 180 bits (437), Expect = 1e-45
Identities = 79/99 (79%), Positives = 93/99 (93%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G ++YFEDNAGVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGSS 144
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 180 bits (437), Expect = 1e-45
Identities = 79/99 (79%), Positives = 93/99 (93%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G ++YFEDNAGVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGSS 144
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 180 bits (437), Expect = 1e-45
Identities = 79/99 (79%), Positives = 93/99 (93%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 50 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 109
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G ++YFEDNAGVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 110 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 82 GRGGSAGAKFRISLGLPAGSS 144
GRGGSAG KFR+SLGLP ++
Sbjct: 22 GRGGSAGNKFRMSLGLPVAAT 42
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVIRQRKPFR 338
GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+R
Sbjct: 65 GAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRG 118
Query: 339 RRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKE 443
R DG I F+DNA V+ NNKGE+ G+ + GPV E
Sbjct: 119 RNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 31.9 bits (69), Expect = 0.43
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +2
Query: 47 FLNFDTTKCLREDVVVPRERNSVSPWVSQLGAVINCADNTGRKESVCDRSPRYQRSPEQT 226
FL++ R+ + V + ++SPW L V C+++ K R R+ +
Sbjct: 159 FLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGA 218
Query: 227 AGGRFRGHDC---GHSQKG*T*TPEKGNAGSG 313
G RG G G T +P + N G G
Sbjct: 219 GSGGARGGPAAIRGGGGSGGTASP-RWNVGGG 249
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 265 TVATIMSPEPAAGSLFRRPLIPWTAITYRFFA----PCVVGAVDYCSQLGDP 122
++A + S P + + FRR L+P+ A F A P ++ A Y + GDP
Sbjct: 160 SLAVLSSSFPPSSAAFRRELLPYMAPLLAFLAKTGSPFLINAYPYFAYKGDP 211
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 96 RGSEIPYLPGSPSWEQ*STAPTTQGAKN 179
RG+ +P L +PSWE+ S APT + K+
Sbjct: 569 RGAAVPTLKMNPSWEKPSVAPTLELRKS 596
>12_02_0915 -
24252495-24253079,24253560-24254759,24255234-24255303,
24257127-24257188
Length = 638
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 47 FLNFDTTKCLREDVVVPRERNSVSPWVSQLGAVINCADNTGRKESV 184
FL+ + ++ ++V + S+ PW L + +C D+ K S+
Sbjct: 128 FLSSSIFRTWKDSIIVLQTTKSLLPWSENLKVINHCVDSIATKASI 173
>09_04_0149 -
15108796-15109353,15109590-15110756,15111571-15111640,
15113747-15113808
Length = 618
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 47 FLNFDTTKCLREDVVVPRERNSVSPWVSQLGAVINCADNTGRKESV 184
F+N + ++ ++V + ++ PW +L + C D K SV
Sbjct: 128 FINSSILRSWKDSIIVLQSTKALLPWSEELKVIGRCIDAIASKTSV 173
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 383 DTRIVLKVYKXSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 246
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>11_01_0746 + 6294277-6294687
Length = 136
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +2
Query: 131 QLGAVINCADNTGRKESVCD----RSPRYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKG 298
+LGA N DN G + + D R + T GG G + S+ G + P G
Sbjct: 22 ELGAGSNRRDNRGGRIRLLDDVGGRRATTTKGAAATLGGNSTGEEAARSRSGASSRPTGG 81
Query: 299 NAGSG 313
G G
Sbjct: 82 GVGKG 86
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 338 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQS 222
S R PLP+D C Y+ ++R + H+ G R S
Sbjct: 25 SSRVPLPEDTCDSYVEQKYRCYIRTLKGCHISGRNRLDS 63
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 390 NNKGEMKGSAITGPVAKECAD 452
N+KG +GS ITG + + CA+
Sbjct: 725 NDKGSNQGSFITGKIVESCAE 745
>05_07_0365 -
29662703-29662710,29664321-29664378,29664675-29664732,
29665029-29665086,29665737-29665794,29666091-29666134,
29666445-29666502,29666799-29666981,29667154-29667211,
29667508-29667565,29667862-29667919,29668216-29668259,
29668570-29668627,29668924-29669106,29669279-29669336,
29669633-29669676,29669987-29670044,29670341-29670398,
29670696-29670753,29671050-29671052
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 125 PREIRNFA-PAEPPRPLLDILLYQNLERNNR 36
P +IR FA P P+L IL Y RNNR
Sbjct: 383 PSDIRCFAEPTAASWPMLWILRYSTFRRNNR 413
>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
Length = 488
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 328 FRCLMTTAGITFFRSSGLPFLTVA-TIMSPEPAAGSLFRRPLIPWTAITYRFFAPCVVGA 152
+R L I F S L + + TI +P P+ ++ +R + A+T F+ C G+
Sbjct: 247 WRSLQAFGDIAFAYSYSLILIEIQDTIRAPPPSESAVMKRATVVSVAVTTVFYMLC--GS 304
Query: 151 VDYCSQLGD 125
+ Y + GD
Sbjct: 305 MGYAA-FGD 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,601
Number of Sequences: 37544
Number of extensions: 362560
Number of successful extensions: 1029
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -